Evidence map›Paper›PMID 27311613›Full record

ArticleArchives of biochemistry and biophysics2016

Non-chemical proton-dependent steps prior to O2-activation limit Azotobacter vinelandii 3-mercaptopropionic acid dioxygenase (MDO) catalysis.

Joshua K Crowell, Sinjinee Sardar, Mohammad S Hossain, Frank W Foss, Brad S Pierce

Open access · greenAbstract read
In one paragraph

Article in Archives of biochemistry and biophysics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.1field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Cyanide replaces substrate in obligate-ordered addition of nitric oxide to the non-heme mononuclear iron AvMDO active site.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Joshua K CrowellDepartment of Chemistry & Biochemistry, College of Science, The University of Texas at Arlington, Arlington, TX 76019, USA.
Sinjinee SardarDepartment of Chemistry & Biochemistry, College of Science, The University of Texas at Arlington, Arlington, TX 76019, USA.
Mohammad S HossainDepartment of Chemistry & Biochemistry, College of Science, The University of Texas at Arlington, Arlington, TX 76019, USA.
Frank W FossDepartment of Chemistry & Biochemistry, College of Science, The University of Texas at Arlington, Arlington, TX 76019, USA.
Brad S PierceDepartment of Chemistry & Biochemistry, College of Science, The University of Texas at Arlington, Arlington, TX 76019, USA. Electronic address: bspierce@uta.edu.
The University of Texas at Arlington · US

Funding

Pre-steady state kinetics and O2/NO-reactivity among thiol dioxygenase enzymesR15GM117511 · NIGMS · UNIVERSITY OF TEXAS ARLINGTON · PI PIERCE, BRADLEY S · 2015 to 2023
$1.2M
NIGMS NIH HHS R15 GM117511
6 · The paper itself

Abstract

3-mercaptopropionate dioxygenase from Azotobacter vinelandii (Av MDO) is a non-heme mononuclear iron enzyme that catalyzes the O2-dependent oxidation of 3-mercaptopropionate (3mpa) to produce 3-sulfinopropionic acid (3spa). With one exception, the active site residues of MDO are identical to bacterial cysteine dioxygenase (CDO). Specifically, the CDO Arg-residue (R50) is replaced by Gln (Q67) in MDO. Despite this minor active site perturbation, substrate-specificity of Av MDO is more relaxed as compared to CDO. In order to investigate the relative timing of chemical and non-chemical events in Av MDO catalysis, the pH/D-dependence of steady-state kinetic parameters (kcat and kcat/KM) and viscosity effects are measured using two different substrates [3mpa and l-cysteine (cys)]. The pL-dependent activity of Av MDO in these reactions can be rationalized assuming a diprotic enzyme model in which three ionic forms of the enzyme are present [cationic, E((z+1)); neutral, E(z); and anionic, E((z-1))]. The activities observed for each substrate appear to be dominated by electrostatic interactions within the enzymatic active site. Given the similarity between MDO and the more extensively characterized mammalian CDO, a tentative model for the role of the conserved 'catalytic triad' is proposed.

Indexed as

3-Mercaptopropionic AcidArginineAzotobacter vinelandiiBacterial ProteinsCatalysisCatalytic DomainCationsCysteineCysteine DioxygenaseDeuterium OxideDioxygenasesEscherichia coliHydrogen-Ion ConcentrationKineticsMolecular ConformationOxygen3-Mercaptopropionic AcidArginineBacterial ProteinsCationsCysteineCysteine DioxygenaseDeuterium OxideDioxygenasesOxygenProtonsSolventsNon-heme mononuclear ironProton inventorySolvent isotope effectsThiol dioxygenaseViscosity effects

Identifiers

PMID27311613
PMCPMC5036937
OpenAlexW2420993685

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.