Evidence map›Paper›PMID 27310312›Full record

ArticleBioscience, biotechnology, and biochemistry2016

Peptidoglycan-associated outer membrane protein Mep45 of rumen anaerobe Selenomonas ruminantium forms a non-specific diffusion pore via its C-terminal transmembrane domain.

Seiji Kojima, Kanako Hayashi, Saeko Tochigi, Tomonobu Kusano, Jun Kaneko, Yoshiyuki Kamio

Open access · bronzeAbstract read
In one paragraph

Article in Bioscience, biotechnology, and biochemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.2field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
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  5. Outer Membrane Proteome ofFrontiers in microbiology · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Seiji Kojimaa Frontier Research Institute for Interdisciplinary Sciences , Tohoku University , Sendai , Japan.
Kanako Hayashic Graduate School of Agricultural Science , Tohoku University , Sendai , Japan.
Saeko Tochigib Graduate School of Life Sciences , Tohoku University , Sendai , Japan.
Tomonobu Kusanob Graduate School of Life Sciences , Tohoku University , Sendai , Japan.
Jun Kanekoc Graduate School of Agricultural Science , Tohoku University , Sendai , Japan.
Yoshiyuki Kamioc Graduate School of Agricultural Science , Tohoku University , Sendai , Japan.
Tohoku University · JPShokei Gakuin University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The major outer membrane protein Mep45 of Selenomonas ruminantium, an anaerobic Gram-negative bacterium, comprises two distinct domains: the N-terminal S-layer homologous (SLH) domain that protrudes into the periplasm and binds to peptidoglycan, and the remaining C-terminal transmembrane domain, whose function has been unknown. Here, we solubilized and purified Mep45 and characterized its function using proteoliposomes reconstituted with Mep45. We found that Mep45 forms a nonspecific diffusion channel via its C-terminal region. The channel was permeable to solutes smaller than a molecular weight of roughly 600, and the estimated pore radius was 0.58 nm. Truncation of the SLH domain did not affect the channel property. On the basis of the fact that Mep45 is the most abundant outer membrane protein in S. ruminantium, we conclude that Mep45 serves as a main pathway through which small solutes diffuse across the outer membrane of this bacterium.

Indexed as

AnaerobiosisAnimalsBacterial ProteinsCell MembraneDiffusionMembrane ProteinsProtein DomainsProtein StabilityRumenSelenomonasSolubilityBacterial ProteinsMembrane ProteinschannelGram-negative bacteriaouter membraneporinrumen

Identifiers

PMID27310312
PMCPMC5020339
OpenAlexW2416221951

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.