Evidence map›Paper›PMID 27310011›Full record

Trial reportPloS one2016

The Application of Digital Pathology to Improve Accuracy in Glomerular Enumeration in Renal Biopsies.

Avi Z Rosenberg, Matthew Palmer, Lino Merlino, Jonathan P Troost, Adil Gasim, Serena Bagnasco, Carmen Avila-Casado, Duncan Johnstone, Jeffrey B Hodgin, Catherine Conway and 4 more

Open access · goldAbstract readClinical Trial
In one paragraph

Trial report in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Quantification of Glomerular Structural Lesions: Associations With Clinical Outcomes and Transcriptomic Profiles in Nephrotic Syndrome.American journal of kidney diseases : the official journal of the National Kidney Foundation · 2022
    Observational
  6. Cellular and molecular interrogation of kidney biopsy specimens.Current opinion in nephrology and hypertension · 2022
    Review
  7. Deep learning segmentation of glomeruli on kidney donor frozen sections.Journal of medical imaging (Bellingham, Wash.) · 2021
    Article
  8. Review
  9. Review
  10. CureGN Study Rationale, Design, and Methods: Establishing a Large Prospective Observational Study of Glomerular Disease.American journal of kidney diseases : the official journal of the National Kidney Foundation · 2019
    Observational
  11. Article
  12. Article
  13. Interstitial fibrosis scored on whole-slide digital imaging of kidney biopsies is a predictor of outcome in proteinuric glomerulopathies.Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association · 2018
    Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 11 institutions in 2 countries.

Avi Z RosenbergDepartment of Pathology, Children's National Medical Center, Washington, DC, United States of America.
Matthew PalmerDepartment of Pathology, University of Pennsylvania, Philadelphia, PA, United States of America.
Lino MerlinoDepartment of Pathology, University of Miami, Miami, FL, United States of America.
Jonathan P TroostDepartment of Pediatrics, Division of Pediatric Nephrology, University of Michigan, Ann Arbor, MI, United States of America.
Adil GasimDepartment of Pathology, University of North Carolina, Chapel Hill, NC, United States of America.
Serena BagnascoDepartment of Pathology, The Johns Hopkins School of Medicine, Baltimore, MD, United States of America.
Carmen Avila-CasadoDepartment of Pathology, Toronto General Hospital, Toronto, Ontario, Canada.
Duncan JohnstoneDepartment of Medicine, Section of Nephrology, Hypertension and Kidney Transplantation Temple University, Philadelphia, PA, United States of America.
Jeffrey B HodginDepartment of Pathology, University of Michigan, Ann Arbor, MI, United States of America.
Catherine ConwayLaboratory of Pathology, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD, United States of America.
Brenda W GillespieBiostatistics Department, School of Public Health, University of Michigan, Ann Arbor, MI, United States of America.
Cynthia C NastDepartment of Pathology, Cedars-Sinai Medical Center, Los Angeles, CA, United States of America.
Laura BarisoniDepartment of Pathology, University of Miami, Miami, FL, United States of America.
Stephen M HewittLaboratory of Pathology, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD, United States of America.
University of Michigan–Ann Arbor · USUniversity of Miami · USCedars-Sinai Medical Center · USCenter for Cancer Research · USJohns Hopkins University · USNational Cancer Institute · USNational Institute of Diabetes and Digestive and Kidney Diseases · USTemple University · USToronto General Hospital · CAUniversity of North Carolina at Chapel Hill · USUniversity of Pennsylvania · US

Funding

Training Program in Clinical & Translationa Research in Human Glomerular DiseaseU54DK083912 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GIPSON, DEBBIE S · 2009 to 2023
$20.3M
The Rho GTPases Cdc42 and Rac1 in diabetic NephropathyK08DK088944 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HODGIN, JEFFREY BENTON · 2010 to 2014
$767k
NIDDK NIH HHS K08 DK088944NIDDK NIH HHS U54 DK083912
6 · The paper itself

Abstract

backgroundIn renal biopsy reporting, quantitative measurements, such as glomerular number and percentage of globally sclerotic glomeruli, is central to diagnostic accuracy and prognosis. The aim of this study is to determine the number of glomeruli and percent globally sclerotic in renal biopsies by means of registration of serial tissue sections and manual enumeration, compared to the numbers in pathology reports from routine light microscopic assessment.

designWe reviewed 277 biopsies from the Nephrotic Syndrome Study Network (NEPTUNE) digital pathology repository, enumerating 9,379 glomeruli by means of whole slide imaging. Glomerular number and the percentage of globally sclerotic glomeruli are values routinely recorded in the official renal biopsy pathology report from the 25 participating centers. Two general trends in reporting were noted: total number per biopsy or average number per level/section. Both of these approaches were assessed for their accuracy in comparison to the analogous numbers of annotated glomeruli on WSI.

resultsThe number of glomeruli annotated was consistently higher than those reported (p<0.001); this difference was proportional to the number of glomeruli. In contrast, percent globally sclerotic were similar when calculated on total glomeruli, but greater in FSGS when calculated on average number of glomeruli (p<0.01). The difference in percent globally sclerotic between annotated and those recorded in pathology reports was significant when global sclerosis is greater than 40%.

conclusionsAlthough glass slides were not available for direct comparison to whole slide image annotation, this study indicates that routine manual light microscopy assessment of number of glomeruli is inaccurate, and the magnitude of this error is proportional to the total number of glomeruli.

Indexed as

Signal Processing, Computer-AssistedBiopsyGlomerulonephritis, IGAGlomerulonephritis, MembranousGlomerulosclerosis, Focal SegmentalHumansKidney GlomerulusMicroscopyNephrotic Syndrome

Identifiers

PMID27310011
PMCPMC4911144
OpenAlexW2428647844

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.