Evidence map›Paper›PMID 27309820›Full record

ArticleMolecular microbiology2016

Structural organization of membrane-inserted hexamers formed by Helicobacter pylori VacA toxin.

Tasia M Pyburn, Nora J Foegeding, Christian González-Rivera, Nathan A McDonald, Kathleen L Gould, Timothy L Cover, Melanie D Ohi

Open access · greenAbstract read
In one paragraph

Article in Molecular microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 19 citations in OpenAlex.

  1. Biomolecules · 2026
    Review
  2. Article
  3. Review
  4. Article
  5. Pathogens (Basel, Switzerland) · 2022
    Article
  6. Article
  7. Review
  8. Article
  9. Cryo-EM structures ofProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  10. Article
  11. Review
  12. Review
  13. While the revolution will not be crystallized, biochemistry reigns supreme.Protein science : a publication of the Protein Society · 2017
    Review
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Tasia M PyburnDepartment of Cell and Developmental Biology, Vanderbilt University School of Medicine, Nashville, TN, 37232.
Nora J FoegedingDepartment of Cell and Developmental Biology, Vanderbilt University School of Medicine, Nashville, TN, 37232.
Christian González-RiveraDepartment of Pathology, Microbiology and Immunology, Vanderbilt University School of Medicine, Nashville, TN, 37232.
Nathan A McDonaldDepartment of Cell and Developmental Biology, Vanderbilt University School of Medicine, Nashville, TN, 37232.
Kathleen L GouldDepartment of Cell and Developmental Biology, Vanderbilt University School of Medicine, Nashville, TN, 37232.
Timothy L CoverDepartment of Pathology, Microbiology and Immunology, Vanderbilt University School of Medicine, Nashville, TN, 37232.
Melanie D OhiDepartment of Cell and Developmental Biology, Vanderbilt University School of Medicine, Nashville, TN, 37232. melanie.ohi@vanderbilt.edu.
Vanderbilt University · USVA Tennessee Valley Healthcare System · US

Funding

Role of Iron and B-Catenin Activation in Gastric CarcinogenesisP01CA116087 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI RICHARD M. PEEK · 2009 to 2026
$27.5M
Vanderbilt/Meharry Initiative for Minority Student DvptR25GM062459 · NIGMS · VANDERBILT UNIVERSITY · PI VELEZ EDWARDS, DIGNA R · 2002 to 2020
$10.4M
Structure-function analysis of H. pylori VacAR01AI039657 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI TIMOTHY L COVER · 1996 to 2026
$8.3M
MOLECULAR BIOPHYSICS TRAINING PROGRAM AT VANDERBILTT32GM008320 · NIGMS · VANDERBILT UNIVERSITY · PI CHAZIN, WALTER J. · 1989 to 2023
$7.9M
Type IV Protein Secretion in Helicobacter pyloriR01AI118932 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI COVER, TIMOTHY L, OHI, MELANIE DIANE · 2016 to 2025
$6.7M
Understanding the molecular mechanisms of H. pylori VacA pore-formationF31AI112324 · NIAID · VANDERBILT UNIVERSITY · PI PYBURN, TASIA · 2014 to 2016
$83k
Pathogenesis of Helicobacter pylori infectionI01BX000627 · VA · VETERANS HEALTH ADMINISTRATION · PI COVER, TIMOTHY L · 2011 to 2018
–
BLRD VA I01 BX000627NCI NIH HHS P01 CA116087NIAID NIH HHS F31 AI112324NIAID NIH HHS R01 AI039657NIAID NIH HHS R01 AI118932NIGMS NIH HHS R25 GM062459NIGMS NIH HHS T32 GM008320
6 · The paper itself

Abstract

Helicobacter pylori colonizes the human stomach and is a potential cause of peptic ulceration or gastric adenocarcinoma. H. pylori secretes a pore-forming toxin known as vacuolating cytotoxin A (VacA). The 88 kDa secreted VacA protein, composed of an N-terminal p33 domain and a C-terminal p55 domain, assembles into water-soluble oligomers. The structural organization of membrane-bound VacA has not been characterized in any detail and the role(s) of specific VacA domains in membrane binding and insertion are unclear. We show that membrane-bound VacA organizes into hexameric oligomers. Comparison of the two-dimensional averages of membrane-bound and soluble VacA hexamers generated using single particle electron microscopy reveals a structural difference in the central region of the oligomers (corresponding to the p33 domain), suggesting that membrane association triggers a structural change in the p33 domain. Analyses of the isolated p55 domain and VacA variants demonstrate that while the p55 domain can bind membranes, the p33 domain is required for membrane insertion. Surprisingly, neither VacA oligomerization nor the presence of putative transmembrane GXXXG repeats in the p33 domain is required for membrane insertion. These findings provide new insights into the process by which VacA binds and inserts into the lipid bilayer to form membrane channels.

Indexed as

Bacterial ProteinsCytotoxinsHeLa CellsHelicobacter pyloriHumansLipid BilayersMembrane ProteinsProtein ConformationProtein DomainsStructure-Activity RelationshipVacuolesBacterial ProteinsCytotoxinsLipid BilayersMembrane ProteinsVacA protein, Helicobacter pylori

Identifiers

PMID27309820
PMCPMC5035229
OpenAlexW2427600800

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.