Evidence map›Paper›PMID 27309805›Full record

ArticleNature2016

Host-mediated sugar oxidation promotes post-antibiotic pathogen expansion.

Franziska Faber, Lisa Tran, Mariana X Byndloss, Christopher A Lopez, Eric M Velazquez, Tobias Kerrinnes, Sean-Paul Nuccio, Tamding Wangdi, Oliver Fiehn, Renée M Tsolis and 1 more

Open access · greenAbstract read
In one paragraph

Article in Nature, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 115 papers.

0numbers the graph read from it
0cells of the map it votes in
115citing papers in PubMed
12.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

115 citing papers in PubMed, 170 citations in OpenAlex.

  1. Trial
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Review
  8. Infection strategies ofGut microbes reports · 2026
    Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Sulfide is a keystone metabolite for gut homeostasis and immunity.bioRxiv : the preprint server for biology · 2025
    Article
  18. Article
  19. Article
  20. Article

55 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 1 institution in 2 countries.

Franziska Faber
Lisa Tran
Mariana X Byndloss
Christopher A Lopez
Eric M Velazquez
Tobias Kerrinnes
Sean-Paul Nuccio
Tamding Wangdi
Oliver Fiehn
Renée M Tsolis
Andreas J Bäumler
University of California, Davis · US

Funding

West Coast Central Comprehensive Metabolomics Resource Core (WC3MRC)U24DK097154 · NIDDK · UNIVERSITY OF CALIFORNIA AT DAVIS · PI FIEHN, OLIVER · 2012 to 2017
$9.9M
UC Davis Biology ProgramR25GM056765 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI GOMES, ALDRIN V. · 1998 to 2019
$9.7M
Exacerbation of colitis by the microbiotaR01AI112445 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Andreas J Baumler · 2015 to 2026
$6.2M
Microbiota Outgrowth by SalmonellaR01AI096528 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI BAUMLER, ANDREAS J · 2011 to 2025
$6.1M
Mechanism of Colonization ResistanceR01AI112949 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Andreas J Baumler · 2016 to 2026
$5.2M
Innate immune sensing of ER stress during bacterial infectionR01AI109799 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI TSOLIS, RENEE M · 2014 to 2024
$3.6M
Animal Models of Infectious Diseases Training ProgramT32AI060555 · NIAID · UNIVERSITY OF CALIFORNIA DAVIS · PI MCSORLEY, STEPHEN J · 2004 to 2025
$3.3M
Students Training in Advanced Research (STAR) ProgramT35OD010956 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI DANIKA L BANNASCH · 2012 to 2026
$1.6M
Year-Long Exposure to Advanced Research (YEAR) Program for Vet StudentsT32OD010931 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI RAYBOULD, HELEN E · 2012 to 2018
$752k
Inflammation-derived sugars lower resistance against SalmonellaR21AI114922 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI BAUMLER, ANDREAS J · 2015 to 2016
$430k
Mechanism of E. coli colonization resistanceR56AI112949 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI BAUMLER, ANDREAS J · 2014 to 2014
$382k
Detection of bacterial Type IV secretion by the unfolded protein responseR21AI112258 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI TSOLIS, RENEE M · 2014 to 2015
$350k
NIAID NIH HHS AI060555NIAID NIH HHS AI096528NIAID NIH HHS AI109799NIAID NIH HHS AI112241NIAID NIH HHS AI112258NIAID NIH HHS AI112445NIAID NIH HHS AI112949NIAID NIH HHS AI114922NIAID NIH HHS F31 AI112241NIAID NIH HHS R01 AI096528NIAID NIH HHS R01 AI109799NIAID NIH HHS R01 AI112445NIAID NIH HHS R01 AI112949NIAID NIH HHS R21 AI112258NIAID NIH HHS R21 AI114922NIAID NIH HHS R56 AI112949NIAID NIH HHS T32 AI060555NIDDK NIH HHS U24 DK097154NIGMS NIH HHS R25 GM056765NIH HHS OD010931NIH HHS T32 OD010931NIH HHS T35 OD010956
6 · The paper itself

Abstract

Changes in the gut microbiota may underpin many human diseases, but the mechanisms that are responsible for altering microbial communities remain poorly understood. Antibiotic usage elevates the risk of contracting gastroenteritis caused by Salmonella enterica serovars, increases the duration for which patients shed the pathogen in their faeces, and may on occasion produce a bacteriologic and symptomatic relapse. These antibiotic-induced changes in the gut microbiota can be studied in mice, in which the disruption of a balanced microbial community by treatment with the antibiotic streptomycin leads to an expansion of S. enterica serovars in the large bowel. However, the mechanisms by which streptomycin treatment drives an expansion of S. enterica serovars are not fully resolved. Here we show that host-mediated oxidation of galactose and glucose promotes post-antibiotic expansion of S. enterica serovar Typhimurium (S. Typhimurium). By elevating expression of the gene encoding inducible nitric oxide synthase (iNOS) in the caecal mucosa, streptomycin treatment increased post-antibiotic availability of the oxidation products galactarate and glucarate in the murine caecum. S. Typhimurium used galactarate and glucarate within the gut lumen of streptomycin pre-treated mice, and genetic ablation of the respective catabolic pathways reduced S. Typhimurium competitiveness. Our results identify host-mediated oxidation of carbohydrates in the gut as a mechanism for post-antibiotic pathogen expansion.

Indexed as

Carbohydrate MetabolismAnimalsAnti-Bacterial AgentsCecumFemaleGalactoseGastroenteritisGlucaric AcidGlucoseHost-Pathogen InteractionsIntestinal MucosaMaleMiceNitric Oxide Synthase Type IIOperonOxidation-ReductionAnti-Bacterial Agentsgalactaric acidGalactoseGlucaric AcidGlucoseNitric Oxide Synthase Type IIReactive Nitrogen SpeciesStreptomycinSugar Acids

Identifiers

PMID27309805
PMCPMC4939260
OpenAlexW2432171596

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.