ArticlePloS one2016
Chloroplast DNA Structural Variation, Phylogeny, and Age of Divergence among Diploid Cotton Species.
Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
27 citing papers in PubMed, 51 citations in OpenAlex.
- Genome-wide evolution and function analysis of ALOG gene family in cotton.Frontiers in genetics · 2025Article
- Multiple domestication events explain the origin ofEcology and evolution · 2023Article
- Dual Domestication, Diversity, and Differential Introgression in Old World Cotton Diploids.Genome biology and evolution · 2022Article
- Genome-wide analysis of zinc finger-homeodomain (ZF-HD) transcription factors in diploid and tetraploid cotton.Functional & integrative genomics · 2022Article
- Features of Chromosome Introgression fromPlants (Basel, Switzerland) · 2022Article
- The complete chloroplast genome of Secale sylvestre (Poaceae: Triticeae).Journal of applied genetics · 2022Article
- Genome-Wide Identification and Characterization ofFrontiers in genetics · 2022Article
- Chloroplast Genomes of GenusFrontiers in genetics · 2022Article
- Nucleotide Evolution, Domestication Selection, and Genetic Relationships of Chloroplast Genomes in the Economically Important Crop GenusFrontiers in plant science · 2022Article
- Inheritance, QTLs, and Candidate Genes of Lint Percentage in Upland Cotton.Frontiers in genetics · 2022Review
- Genome-Wide Identification and Functional Investigation ofPlants (Basel, Switzerland) · 2021Article
- Article
- Horizontal Gene Transfer Involving Chloroplasts.International journal of molecular sciences · 2021Review
- Complete Chloroplast Genomes ofFrontiers in plant science · 2021Article
- Genome-wide identification of the MIOX gene family and their expression profile in cotton development and response to abiotic stress.PloS one · 2021Article
- Taxonomical Evaluation of Plant Chloroplastic Markers by Bayesian Classifier.Frontiers in plant science · 2021Article
- TheG3 (Bethesda, Md.) · 2020Article
- Relationship between meiotic behaviour and fertility in backcross-1 derivatives of the [(Comparative cytogenetics · 2020Article
- Intergenomic gene transfer in diploid and allopolyploid Gossypium.BMC plant biology · 2019Article
- Insights into the Evolution of the New World Diploid Cottons (Gossypium, Subgenus Houzingenia) Based on Genome Sequencing.Genome biology and evolution · 2019Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
14 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The cotton genus (Gossypium spp.) contains 8 monophyletic diploid genome groups (A, B, C, D, E, F, G, K) and a single allotetraploid clade (AD). To gain insight into the phylogeny of Gossypium and molecular evolution of the chloroplast genome in this group, we performed a comparative analysis of 19 Gossypium chloroplast genomes, six reported here for the first time. Nucleotide distance in non-coding regions was about three times that of coding regions. As expected, distances were smaller within than among genome groups. Phylogenetic topologies based on nucleotide and indel data support for the resolution of the 8 genome groups into 6 clades. Phylogenetic analysis of indel distribution among the 19 genomes demonstrates contrasting evolutionary dynamics in different clades, with a parallel genome downsizing in two genome groups and a biased accumulation of insertions in the clade containing the cultivated cottons leading to large (for Gossypium) chloroplast genomes. Divergence time estimates derived from the cpDNA sequence suggest that the major diploid clades had diverged approximately 10 to 11 million years ago. The complete nucleotide sequences of 6 cpDNA genomes are provided, offering a resource for cytonuclear studies in Gossypium.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.