Evidence map›Paper›PMID 27307569›Full record

ArticleJournal of virology2016

Characterization of a Novel Conformational GII.4 Norovirus Epitope: Implications for Norovirus-Host Interactions.

Noelia Carmona-Vicente, Susana Vila-Vicent, David Allen, Roberto Gozalbo-Rovira, Miren Iturriza-Gómara, Javier Buesa, Jesús Rodríguez-Díaz

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it, 23 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Noelia Carmona-VicenteDepartment of Microbiology, School of Medicine, University of Valencia, Valencia, Spain.
Susana Vila-VicentDepartment of Microbiology, School of Medicine, University of Valencia, Valencia, Spain.
David AllenVirus Reference Department, Public Health England, London, United Kingdom NIHR Health Protection Research Unit in Gastrointestinal Infections, University of Liverpool, Liverpool, United Kingdom.
Roberto Gozalbo-RoviraDepartment of Microbiology, School of Medicine, University of Valencia, Valencia, Spain.
Miren Iturriza-GómaraNIHR Health Protection Research Unit in Gastrointestinal Infections, University of Liverpool, Liverpool, United Kingdom Institute of Infection and Global Health, University of Liverpool, Liverpool, United Kingdom.
Javier BuesaDepartment of Microbiology, School of Medicine, University of Valencia, Valencia, Spain Institute for Clinical Research of the Hospital Clínico Universitario (INCLIVA), Valencia, Spain jesus.rodriguez@uv.es javier.buesa@uv.es.
Jesús Rodríguez-DíazDepartment of Microbiology, School of Medicine, University of Valencia, Valencia, Spain Institute for Clinical Research of the Hospital Clínico Universitario (INCLIVA), Valencia, Spain jesus.rodriguez@uv.es javier.buesa@uv.es.ORCID 0000-0002-9698-7684
Universitat de València · ESUniversity of Liverpool · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

unlabelledHuman noroviruses (NoVs) are the main etiological agents of acute gastroenteritis worldwide. While NoVs are highly diverse (more than 30 genotypes have been detected in humans), during the last 40 years most outbreaks and epidemics have been caused by GII.4 genotype strains, raising questions about their persistence in the population. Among other potential explanations, immune evasion is considered to be a main driver of their success. In order to study antibody recognition and evasion in detail, we analyzed a conformational epitope recognized by a monoclonal antibody (3C3G3) by phage display, site-directed mutagenesis, and surface plasmon resonance. Our results show that the predicted epitope is composed of 11 amino acids within the P domain: P245, E247, I389, Q390, R397, R435, G443, Y444, P445, N446, and D448. Only two of them, R397 and D448, differ from the homologous variant (GII.4 Den-Haag_2006b) and from a previous variant (GII.4 VA387_1996) that is not recognized by the antibody. A double mutant derived from the VA387_1996 variant containing both changes, Q396R and N447D, is recognized by the 3C3G3 monoclonal antibody, confirming the participation of the two sites in the epitope recognized by the antibody. Furthermore, a single change, Q396R, is able to modify the histo-blood group antigen (HBGA) recognition pattern. These results provide evidence that the epitope recognized by the 3C3G3 antibody is involved in the virus-host interactions, both at the immunological and at the receptor levels. IMPORTANCE: Human noroviruses are the main cause of viral diarrhea worldwide in people of all ages. Noroviruses can infect individuals who had been previously exposed to the same or different norovirus genotypes. Norovirus genotype GII.4 has been reported to be most prevalent during the last 40 years. In the present study, we describe a novel viral epitope identified by a monoclonal antibody and located within the highly diverse P domain of the capsid protein. The evolution of this epitope along with sequential GII.4 variants has allowed noroviruses to evade previously elicited antibodies, thus explaining how the GII.4 genotype can persist over long periods, reinfecting the population. Our results also show that the epitope participates in the recognition of host receptors that have evolved over time, as well.

Indexed as

Antibodies, MonoclonalAntibodies, ViralCell Surface Display TechniquesEpitopes, B-LymphocyteGenotypeHost-Pathogen InteractionsHumansMutagenesis, Site-DirectedNorovirusProtein BindingSurface Plasmon ResonanceAntibodies, MonoclonalAntibodies, ViralEpitopes, B-Lymphocyte

Identifiers

PMID27307569
PMCPMC4988155
OpenAlexW2435254082

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.