Evidence map›Paper›PMID 27307497›Full record

ArticleRNA (New York, N.Y.)2016

mRNA bound to the 30S subunit is a HigB toxin substrate.

Marc A Schureck, Tatsuya Maehigashi, Stacey J Miles, Jhomar Marquez, Christine M Dunham

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.7field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. The DisorderedMicroorganisms · 2021
    Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. HigB ofFrontiers in cellular and infection microbiology · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Marc A SchureckDepartment of Biochemistry, Emory University School of Medicine, Atlanta, Georgia 30322, USA.
Tatsuya MaehigashiDepartment of Biochemistry, Emory University School of Medicine, Atlanta, Georgia 30322, USA.
Stacey J MilesDepartment of Biochemistry, Emory University School of Medicine, Atlanta, Georgia 30322, USA.
Jhomar MarquezDepartment of Biochemistry, Emory University School of Medicine, Atlanta, Georgia 30322, USA.
Christine M DunhamDepartment of Biochemistry, Emory University School of Medicine, Atlanta, Georgia 30322, USA.
Emory University · US

Funding

Overall EvaluationP41GM103403 · NIGMS · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2012 to 2017
$14.3M
Training Program in Biochemistry, Cell and Molecular BiologyT32GM008367 · NIGMS · EMORY UNIVERSITY · PI BOISE, LAWRENCE H., CORBETT, ANITA H. · 1990 to 2019
$5.6M
Structural Studies of Ribosome RegulationR01GM093278 · NIGMS · EMORY UNIVERSITY · PI DUNHAM, CHRISTINE M · 2010 to 2022
$4.6M
Mechanism of HigB-mediated ribosome-dependent mRNA degradationF31GM108351 · NIGMS · EMORY UNIVERSITY · PI SCHURECK, MARC ANTHONY · 2013 to 2014
$62k
NIGMS NIH HHS F31 GM108351NIGMS NIH HHS P41 GM103403NIGMS NIH HHS R01 GM093278NIGMS NIH HHS T32 GM008367
6 · The paper itself

Abstract

Activation of bacterial toxins during stress results in cleavage of mRNAs in the context of the ribosome. These toxins are thought to function as global translational inhibitors yet recent studies suggest each may have distinct mRNA specificities that result in selective translation for bacterial survival. Here we demonstrate that mRNA in the context of a bacterial 30S subunit is sufficient for ribosome-dependent toxin HigB endonucleolytic activity, suggesting that HigB interferes with the initiation step of translation. We determined the X-ray crystal structure of HigB bound to the 30S, revealing that two solvent-exposed clusters of HigB basic residues directly interact with 30S 16S rRNA helices 18, 30, and 31. We further show that these HigB residues are essential for ribosome recognition and function. Comparison with other ribosome-dependent toxins RelE and YoeB reveals that each interacts with similar features of the 30S aminoacyl (A) site yet does so through presentation of diverse structural motifs.

Indexed as

Crystallography, X-RayMolecular StructureProtein BiosynthesisRNA, MessengerToxins, BiologicalRNA, MessengerToxins, BiologicalmRNAprotein synthesisribosomeRNasestringent responsetoxin–antitoxin modules

Identifiers

PMID27307497
PMCPMC4931118
OpenAlexW2420508181

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.