Evidence map›Paper›PMID 27307105›Full record

ArticlePathogens and disease2016

The Rickettsia type IV secretion system: unrealized complexity mired by gene family expansion.

Joseph J Gillespie, Isabelle Q H Phan, Timothy P Driscoll, Mark L Guillotte, Stephanie S Lehman, Kristen E Rennoll-Bankert, Sandhya Subramanian, Magda Beier-Sexton, Peter J Myler, M Sayeedur Rahman and 1 more

Abstract read
In one paragraph

Article in Pathogens and disease, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed.

  1. Adaptation ofmSphere · 2026
    Article
  2. Article
  3. Hybrid capture RNA-seq defines temporal gene expression inbioRxiv : the preprint server for biology · 2026
    Article
  4. Review
  5. Article
  6. Article
  7. The type IV secretion system ofMicrobial genomics · 2025
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. PathogenicJournal of bacteriology · 2024
    Review
  14. mSphere · 2023
    Article
  15. bioRxiv : the preprint server for biology · 2023
    Article
  16. Metagenome diversity illuminates origins of pathogen effectors.bioRxiv : the preprint server for biology · 2023
    Article
  17. Analysis of the Type 4 Effectome across the GenusInternational journal of molecular sciences · 2022
    Article
  18. Infection and immunity · 2022
    Review
  19. Article
  20. Subversion of host cell signaling: The arsenal of Rickettsial species.Frontiers in cellular and infection microbiology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Joseph J GillespieDepartment of Microbiology and Immunology, University of Maryland School of Medicine, 685 W. Baltimore St., HSF I Suite 380, Baltimore, MD 21201, USA JGillespie@som.umaryland.edu.
Isabelle Q H PhanSeattle Structural Genomics Center for Infectious Disease, 307 Westlake Ave North, Seattle, WA 98109, USA Center for Infectious Disease Research (formerly Seattle Biomedical Research Institute), Seattle, WA 98109, USA.
Timothy P DriscollDepartment of Biology, West Virginia University, Life Sciences Building, PO Box 6057, Morgantown, WV 26506-6201, USA.
Mark L GuillotteDepartment of Microbiology and Immunology, University of Maryland School of Medicine, 685 W. Baltimore St., HSF I Suite 380, Baltimore, MD 21201, USA.
Stephanie S LehmanDepartment of Microbiology and Immunology, University of Maryland School of Medicine, 685 W. Baltimore St., HSF I Suite 380, Baltimore, MD 21201, USA.
Kristen E Rennoll-BankertDepartment of Microbiology and Immunology, University of Maryland School of Medicine, 685 W. Baltimore St., HSF I Suite 380, Baltimore, MD 21201, USA.
Sandhya SubramanianSeattle Structural Genomics Center for Infectious Disease, 307 Westlake Ave North, Seattle, WA 98109, USA Center for Infectious Disease Research (formerly Seattle Biomedical Research Institute), Seattle, WA 98109, USA.
Magda Beier-SextonDepartment of Microbiology and Immunology, University of Maryland School of Medicine, 685 W. Baltimore St., HSF I Suite 380, Baltimore, MD 21201, USA.
Peter J MylerSeattle Structural Genomics Center for Infectious Disease, 307 Westlake Ave North, Seattle, WA 98109, USA Center for Infectious Disease Research (formerly Seattle Biomedical Research Institute), Seattle, WA 98109, USA.
M Sayeedur RahmanDepartment of Microbiology and Immunology, University of Maryland School of Medicine, 685 W. Baltimore St., HSF I Suite 380, Baltimore, MD 21201, USA.
Abdu F AzadDepartment of Microbiology and Immunology, University of Maryland School of Medicine, 685 W. Baltimore St., HSF I Suite 380, Baltimore, MD 21201, USA.

Funding

MURINE TYPHUS: VECTOR BIOLOGY AND TRANSMISSIONR01AI017828 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI RAHMAN, MOHAMMED SAYEEDUR · 1985 to 2022
$10.2M
Rickettsia-host interface and multiple paths to invasionR01AI126853 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI Mohammed Sayeedur Rahman, Oliver Voss · 2016 to 2026
$6.9M
Signaling Pathways in Innate ImmunityT32AI095190 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI Stefanie N. Vogel · 2012 to 2026
$4.7M
IMMUNITY AND INFECTIONT32AI007540 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI KAPER, JAMES B · 1998 to 2018
$2.2M
Characterizing gene family expansion in an atypical bacterial secretion systemR21AI126108 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI GILLESPIE, JOSEPH J, RAHMAN, MOHAMMED SAYEEDUR · 2016 to 2017
$424k
NIAID NIH HHS HHSN272201200025CNIAID NIH HHS R01 AI017828NIAID NIH HHS R01 AI126853NIAID NIH HHS R21 AI126108NIAID NIH HHS T32 AI007540NIAID NIH HHS T32 AI095190
6 · The paper itself

Abstract

Many prokaryotes utilize type IV secretion systems (T4SSs) to translocate substrates (e.g. nucleoprotein, DNA, protein) across the cell envelope, and/or to elaborate surface structures (i.e. pili or adhesins). Among eight distinct T4SS classes, P-T4SSs are typified by the Agrobacterium tumefaciens vir T4SS, which is comprised of 12 scaffold components (VirB1-VirB11, VirD4). While most P-T4SSs include all 12 Vir proteins, some differ from the vir archetype by either containing additional scaffold components not analogous to Vir proteins or lacking one or more of the Vir proteins. In a special case, the Rickettsiales vir homolog (rvh) P-T4SS comprises unprecedented gene family expansion. rvh contains three families of gene duplications (rvhB9, rvhB8, rvhB4): RvhB9,8,4-I are conserved relative to equivalents in other P-T4SSs, while RvhB9,8,4-II have evolved atypical features that deviate substantially from other homologs. Furthermore, rvh contains five VirB6-like genes (rvhB6a-e), which are tandemly arrayed and contain large N- and C-terminal extensions. Our work herein focuses on the complexity underpinned by rvh gene family expansion. Furthermore, we describe an RvhB10 insertion, which occurs in a region that forms the T4SS pore. The significance of these curious properties to rvh structure and function is evaluated, shedding light on a highly complex T4SS.

Indexed as

Gene DuplicationGenes, BacterialMultigene FamilyType IV Secretion SystemsAmino Acid MotifsAmino Acid SequenceBacterial ProteinsGene Expression Regulation, BacterialGene OrderModels, MolecularMutagenesis, InsertionalPosition-Specific Scoring MatricesProtein BindingProtein ConformationProtein DomainsProtein Interaction Domains and MotifsBacterial ProteinsType IV Secretion Systemsgene duplicationobligate intracellular bacteriapathogenesisRickettsiaRickettsiales vir homologtype IV secretion system

Identifiers

PMID27307105
PMCPMC5505475

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.