Evidence map›Paper›PMID 27306334›Full record

ArticleFASEB journal : official publication of the Federation of American Societies for Experimental Biology2016

Knockdown of DNA methyltransferase 3a alters gene expression and inhibits function of embryonic cardiomyocytes.

Xiefan Fang, Ryan R Poulsen, John Wang-Hu, Olivia Shi, Nicholas S Calvo, Chelsey S Simmons, Scott A Rivkees, Christopher C Wendler

Open access · greenAbstract read
In one paragraph

Article in FASEB journal : official publication of the Federation of American Societies for Experimental Biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 35 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Review
  6. Genes · 2023
    Article
  7. Review
  8. Article
  9. Review
  10. Epigenetics and Heart Development.Frontiers in cell and developmental biology · 2021
    Review
  11. Article
  12. Myocardial tissue-specific Dnmt1 knockout in rats protects against pathological injury induced by Adriamycin.Laboratory investigation; a journal of technical methods and pathology · 2020
    Article
  13. Epigenetic Regulation of Cardiac Development and Disease through DNA Methylation.Journal of life sciences (Westlake Village, Calif.) · 2019
    Article
  14. Epigenetics in dilated cardiomyopathy.Current opinion in cardiology · 2019
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Xiefan FangChild Health Research Institute, Department of Pediatrics, College of Medicine, University of Florida, Gainesville, Florida, USA; and.
Ryan R PoulsenChild Health Research Institute, Department of Pediatrics, College of Medicine, University of Florida, Gainesville, Florida, USA; and.
John Wang-HuChild Health Research Institute, Department of Pediatrics, College of Medicine, University of Florida, Gainesville, Florida, USA; and.
Olivia ShiChild Health Research Institute, Department of Pediatrics, College of Medicine, University of Florida, Gainesville, Florida, USA; and.
Nicholas S CalvoDepartment of Mechanical and Aerospace Engineering, College of Engineering, University of Florida, Gainesville, Florida, USA.
Chelsey S SimmonsDepartment of Mechanical and Aerospace Engineering, College of Engineering, University of Florida, Gainesville, Florida, USA.
Scott A RivkeesChild Health Research Institute, Department of Pediatrics, College of Medicine, University of Florida, Gainesville, Florida, USA; and.
Christopher C WendlerChild Health Research Institute, Department of Pediatrics, College of Medicine, University of Florida, Gainesville, Florida, USA; and cwendler@ufl.edu.
Florida College · USUniversity of Florida · USUniversity of Florida Health · US

Funding

Adenosinergic Mechanisms of Intrauterine Growth RetardationR01HD058086 · NICHD · YALE UNIVERSITY · PI RIVKEES, SCOTT A. · 2009 to 2010
$824k
NICHD NIH HHS R01 HD058086
6 · The paper itself

Abstract

We previously found that in utero caffeine exposure causes down-regulation of DNA methyltransferases (DNMTs) in embryonic heart and results in impaired cardiac function in adulthood. To assess the role of DNMTs in these events, we investigated the effects of reduced DNMT expression on embryonic cardiomyocytes. siRNAs were used to knock down individual DNMT expression in primary cultures of mouse embryonic cardiomyocytes. Immunofluorescence staining was conducted to evaluate cell morphology. A video-based imaging assay and multielectrode array were used to assess cardiomyocyte contractility and electrophysiology, respectively. RNA-Seq and multiplex bisulfite sequencing were performed to examine gene expression and promoter methylation, respectively. At 72 h after transfection, reduced DNMT3a expression, but not DNMT1 or -3b, disrupted sarcomere assembly and decreased beating frequency, contractile movement, amplitude of field action potential, and cytosolic calcium signaling of cardiomyocytes. RNA-Seq analysis revealed that the DNMT3a-deficient cells had deactivated gene networks involved in calcium, endothelin-1, renin-angiotensin, and cardiac β-adrenergic receptor signaling, which were not inhibited by DNMT3b siRNA. Moreover, decreased methylation levels were found in the promoters of Myh7, Myh7b, Tnni3, and Tnnt2, consistent with the up-regulation of these genes by DNMT3a siRNA. These data show that DNMT3a plays an important role in regulating embryonic cardiomyocyte gene expression, morphology and function.-Fang, X., Poulsen, R. R., Wang-Hu, J., Shi, O., Calvo, N. S., Simmons, C. S., Rivkees, S. A., Wendler, C. C. Knockdown of DNA methyltransferase 3a alters gene expression and inhibits function of embryonic cardiomyocytes.

Indexed as

Action PotentialsAnimalsApoptosisCalcium SignalingCell SurvivalDNA (Cytosine-5-)-Methyltransferase 1DNA (Cytosine-5-)-MethyltransferasesDNA Methyltransferase 3ADNA Methyltransferase 3BDown-RegulationEmbryo, MammalianGene Expression Regulation, DevelopmentalGene Knockdown TechniquesMiceMyocytes, CardiacSarcomeresDNA (Cytosine-5-)-Methyltransferase 1DNA (Cytosine-5-)-MethyltransferasesDNA Methyltransferase 3ADNA Methyltransferase 3BDnmt1 protein, mouseDnmt3a protein, mousecellular morphologycontractilityDNA methylationtranscriptome

Identifiers

PMID27306334
PMCPMC5001511
OpenAlexW2424424378

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.