ArticleScientific reports2016
Distinct transcriptome profiles reveal gene expression patterns during fruit development and maturation in five main cultivated species of pear (Pyrus L.).
Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.
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Who cites it
33 citing papers in PubMed.
- Article
- Pear scion genotypes shape rhizosphere fungal communities in association with photosynthetic sugar metabolism.BMC plant biology · 2026Article
- Genome wide identification of serotonin N-acetyltransferase (Frontiers in plant science · 2026Article
- The PbrMADS1-PbrMYB169 complex has uniquely emerged to regulate lignification of stone cells in pear.Journal of integrative plant biology · 2026Article
- Genomic insights into deleterious mutations and their impact on agronomic traits during pear domestication.Horticulture research · 2025Article
- Comparative genomic analyses reveal different genetic basis of two types of fruit in Maloideae.Nature communications · 2025Article
- Haplotype-resolved, gap-free genome assemblies provide insights into the divergence between Asian and European pears.Nature genetics · 2025Article
- Headspace Solid-Phase Microextraction and Gas Chromatography-Mass Spectrometry Combined with Sensory Evaluation for the Analysis of Volatile Aromatic Compounds in Apricot (Foods (Basel, Switzerland) · 2024Article
- Editorial: Transcriptomics of fruit growth, development and ripening.Frontiers in plant science · 2024Article
- Article
- The pear genomics database (PGDB): a comprehensive multi-omics research platform for Pyrus spp.BMC plant biology · 2023Article
- PearMODB: a multiomics database for pear (Pyrus) genomics, genetics and breeding study.Database : the journal of biological databases and curation · 2023Article
- Metabolic Profiling and Potential Taste Biomarkers of Two Rambutans during Maturation.Molecules (Basel, Switzerland) · 2023Article
- QTL mapping and transcriptome analysis of sugar content during fruit ripening ofFrontiers in plant science · 2023Article
- SlERF.F12 modulates the transition to ripening in tomato fruit by recruiting the co-repressor TOPLESS and histone deacetylases to repress key ripening genes.The Plant cell · 2022Article
- Pear genetics: Recent advances, new prospects, and a roadmap for the future.Horticulture research · 2022Article
- Genome-Wide Analysis of KNOX Transcription Factors and Expression Pattern of Dwarf-RelatedFrontiers in plant science · 2022Article
- Construction of a high-density bin-map and identification of fruit quality-related quantitative trait loci and functional genes in pear.Horticulture research · 2022Article
- Transcriptome and Resequencing Analyses Provide Insight into Differences in Organic Acid Accumulation in Two Pear Varieties.International journal of molecular sciences · 2021Article
- Genome-Wide Analysis of RAV Transcription Factors and Functional Characterization of Anthocyanin-Biosynthesis-RelatedInternational journal of molecular sciences · 2021Article
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7 authors.
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No grant is acknowledged in the PubMed record.
Abstract
The transcriptomes of five pear cultivars, 'Hosui' (P. pyrifolia), 'Yali' (P. bretschneideri), 'Kuerlexiangli' (P. sinkiangensis), 'Nanguoli' (P. ussuriensis), and 'Starkrimson' (P. communis) were sequenced at seven key fruit developmental stages, from fruit setting to maturation and fruit senescence after harvesting. In total, 33,136 genes that could be mapped by reads, were analyzed. Most gene expression cluster models showed a steadily decreasing trend. Gene expression patterns had obvious differences according to maturity type, that is, post-ripening cultivars were still vigorous at maturity, and showed a higher proportion of up-regulated genes; non post-ripening cultivars had a gradually decreasing tendency during fruit maturation. Meanwhile, differentially expressed genes related to fruit quality and development, such as stone cells, sugar, acid and hormones, were identified. Co-expression analysis revealed that several ethylene synthesis genes and polyphenoloxidase-related genes interacted with each other directly, and an indirect relationship was reflected between ethylene synthesis genes and ethylene response genes. In addition, the highly diverse SNPs represented the great differences between oriental and occidental pears. Understanding how RNA-seq based gene-expression patterns and differential gene expression contribute to fruit quality allows us to build models for gene-expression for fruit development of Pyrus species.
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