Evidence map›Paper›PMID 27304457›Full record

ArticlePloS one2016

Detection of Novel Integrons in the Metagenome of Human Saliva.

Supathep Tansirichaiya, Md Ajijur Rahman, Agata Antepowicz, Peter Mullany, Adam P Roberts

Open access · goldAbstract readMulticenter Study
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 27 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Supathep TansirichaiyaDepartment of Microbial Diseases, UCL Eastman Dental Institute, University College London, 256 Gray's Inn Road, London, WC1X 8LD, United Kingdom.
Md Ajijur RahmanDepartment of Microbial Diseases, UCL Eastman Dental Institute, University College London, 256 Gray's Inn Road, London, WC1X 8LD, United Kingdom.
Agata AntepowiczDepartment of Microbial Diseases, UCL Eastman Dental Institute, University College London, 256 Gray's Inn Road, London, WC1X 8LD, United Kingdom.
Peter MullanyDepartment of Microbial Diseases, UCL Eastman Dental Institute, University College London, 256 Gray's Inn Road, London, WC1X 8LD, United Kingdom.
Adam P RobertsDepartment of Microbial Diseases, UCL Eastman Dental Institute, University College London, 256 Gray's Inn Road, London, WC1X 8LD, United Kingdom.
Eastman Dental Hospital · GBUniversity College London · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Integrons are genetic elements capable of capturing and expressing open reading frames (ORFs) embedded within gene cassettes. They are involved in the dissemination of antibiotic resistance genes (ARGs) in clinically important pathogens. Although the ARGs are common in the oral cavity the association of integrons and antibiotic resistance has not been reported there. In this work, a PCR-based approach was used to investigate the presence of integrons and associated gene cassettes in human oral metagenomic DNA obtained from both the UK and Bangladesh. We identified a diverse array of gene cassettes containing ORFs predicted to confer antimicrobial resistance and other adaptive traits. The predicted proteins include a putative streptogramin A O-acetyltransferase, a bleomycin binding protein, cof-like hydrolase, competence and motility related proteins. This is the first study detecting integron gene cassettes directly from oral metagenomic DNA samples. The predicted proteins are likely to carry out a multitude of functions; however, the function of the majority is yet unknown.

Indexed as

AdultAgedAnti-Bacterial AgentsBacterial ProteinsBangladeshDNA, BacterialDrug Resistance, MicrobialFemaleGenes, BacterialHumansIntegronsMaleMetagenomeMicrobiotaMiddle AgedOpen Reading FramesAnti-Bacterial AgentsBacterial ProteinsDNA, Bacterial

Identifiers

PMID27304457
PMCPMC4909258
OpenAlexW2439832344

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.