Evidence map›Paper›PMID 27303702›Full record

ArticlemSphere

Isolation and Characterization of a Novel Gammaherpesvirus from a Microbat Cell Line.

Reed S Shabman, Susmita Shrivastava, Tshidi Tsibane, Oliver Attie, Anitha Jayaprakash, Chad E Mire, Kari E Dilley, Vinita Puri, Timothy B Stockwell, Thomas W Geisbert and 2 more

Open access · goldAbstract read
In one paragraph

Article in mSphere. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 26 citations in OpenAlex.

  1. Review
  2. Tissue and cellular tropism ofVeterinary pathology · 2024
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Novel herpesviruses in neotropical bats and their relationship with other members of the Herpesviridae family.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2020
    Article
  8. Article
  9. Novel Insights Into Immune Systems of Bats.Frontiers in immunology · 2020
    Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Reed S ShabmanVirology Group, J. Craig Venter Institute, Rockville, Maryland, USA; Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
Susmita ShrivastavaVirology Group, J. Craig Venter Institute, Rockville, Maryland, USA.
Tshidi TsibaneDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
Oliver AttieDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
Anitha JayaprakashDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
Chad E MireDepartment of Microbiology and Immunology, University of Texas Medical Branch, Galveston, Texas, USA.
Kari E DilleyVirology Group, J. Craig Venter Institute, Rockville, Maryland, USA.
Vinita PuriVirology Group, J. Craig Venter Institute, Rockville, Maryland, USA.
Timothy B StockwellVirology Group, J. Craig Venter Institute, Rockville, Maryland, USA.
Thomas W GeisbertDepartment of Microbiology and Immunology, University of Texas Medical Branch, Galveston, Texas, USA.
Ravi SachidanandamDepartment of Oncological Sciences, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
Christopher F BaslerDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
Icahn School of Medicine at Mount Sinai · USJ. Craig Venter Institute · USThe University of Texas Medical Branch at Galveston · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

While employing deep sequencing and de novo assembly to characterize the mRNA transcript profile of a cell line derived from the microbat Myotis velifer incautus, we serendipitously identified mRNAs encoding proteins with a high level of identity to herpesviruses. A majority were closely related to proteins of equine herpesvirus 2 (EHV-2), a horse gammaherpesvirus. We demonstrated by electron microscopy the presence of herpesvirus-like particles in the microbat cells. Passage of supernatants from microbat cells to Vero cells resulted in syncytium formation, and expression of viral genes and amplification of viral DNA were demonstrated by quantitative PCR. Susceptibility of human cell lines to productive infection was also demonstrated. Next-generation sequencing and de novo assembly of the viral genome from supernatants from Vero cells yielded a single contig of approximately 130 kb with at least 77 open reading frames (ORFs), predicted microRNAs (miRNAs), and a gammaherpesvirus genomic organization. Phylogenic analysis of the envelope glycoprotein (gB) and DNA polymerase (POLD1) revealed similarity to multiple gammaherpesviruses, including those from as-yet-uncultured viruses of the Rhadinovirus genus that were obtained by deep sequencing of bat tissues. Moreover, the assembled genome revealed ORFs that share little or no homology to known ORFs in EHV-2 but are similar to accessory proteins of other gammaherpesviruses. Some also have striking homology to predicted Myotis bat proteins. Cumulatively, this study provides the first isolation and characterization of a replication-competent bat gammaherpesvirus. IMPORTANCE Bats are of significant interest as reservoirs for zoonotic viral pathogens; however, tools to dissect bat-virus interactions are limited in availability. This study serendipitously identified, in an established bat cell line, a fully replication-competent gammaherpesvirus; determined the complete genome sequence of the virus; and generated a viral transcript map. This virus can replicate in select human and nonhuman primate cell lines. However, analyses of viral sequences support a bat origin for this virus; we therefore refer to the virus as bat gammaherpesvirus 8 (BGHV8). The viral genome contains unique open reading frames that likely encode modulators of bat innate and adaptive immune signaling pathways and expresses viral miRNAs. The virus and its gene products should provide a unique tool to dissect both bat and gammaherpesvirus biology.

Indexed as

batsgenomicsherpesvirusesnext-generation sequencingtranscriptomicsvirus discovery

Identifiers

PMID27303702
PMCPMC4863610
OpenAlexW2274031136

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.