ArticleFrontiers in plant science2016
Utilizing "Omic" Technologies to Identify and Prioritize Novel Sources of Resistance to the Oomycete Pathogen Phytophthora infestans in Potato Germplasm Collections.
Article in Frontiers in plant science, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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Who cites it
17 citing papers in PubMed.
- Phased potato genome assembly and association genetics enable delineation of the H1 resistance locus against potato cyst nematodes.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Characterization and Potential Role of Fatty Acid-Solamine Conjugates in Plant Defense against Herbivores and Pathogens in Wild Potato Species.Journal of agricultural and food chemistry · 2025Article
- Modern Breeding Strategies and Tools for Durable Late Blight Resistance in Potato.Plants (Basel, Switzerland) · 2024Review
- SMRT-AgRenSeq-d in potato (Horticulture research · 2023Article
- HISS: Snakemake-based workflows for performing SMRT-RenSeq assembly, AgRenSeq and dRenSeq for the discovery of novel plant disease resistance genes.BMC bioinformatics · 2023Article
- Diversity of Late Blight Resistance Genes in the VIR Potato Collection.Plants (Basel, Switzerland) · 2023Article
- The Omics Hunt for Novel Molecular Markers of Resistance toPlants (Basel, Switzerland) · 2021Article
- Fine dissection of limber pine resistance to Cronartium ribicola using targeted sequencing of the NLR family.BMC genomics · 2021Article
- Identification of Resistance Genes Using Diagnostic R-Gene Enrichment Sequencing (dRenSeq).Methods in molecular biology (Clifton, N.J.) · 2021Article
- Resisting Potato Cyst Nematodes With Resistance.Frontiers in plant science · 2021Review
- RLP/K enrichment sequencing; a novel method to identify receptor-like protein (RLP) and receptor-like kinase (RLK) genes.The New phytologist · 2020Article
- Allelic Variation and Selection in Effector Genes ofPathogens (Basel, Switzerland) · 2020Article
- Mapping the H2 resistance effective against Globodera pallida pathotype Pa1 in tetraploid potato.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Article
- Tracking disease resistance deployment in potato breeding by enrichment sequencing.Plant biotechnology journal · 2019Article
- Pathogen enrichment sequencing (PenSeq) enables population genomic studies in oomycetes.The New phytologist · 2019Article
- Identification and rapid mapping of a gene conferring broad-spectrum late blight resistance in the diploid potato species Solanum verrucosum through DNA capture technologies.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018Article
- Potato late blight field resistance from QTL dPI09c is conferred by the NB-LRR gene R8.Journal of experimental botany · 2018Article
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14 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The greatest threat to potato production world-wide is late blight, caused by the oomycete pathogen Phytophthora infestans. A screen of 126 wild diploid Solanum accessions from the Commonwealth Potato Collection (CPC) with P. infestans isolates belonging to the genotype 13-A2 identified resistances in the species S. bulbocastanum, S. capsicibaccatum, S. microdontum, S. mochiquense, S. okadae, S. pinnatisectum, S. polyadenium, S. tarijense, and S. verrucosum. Effector-omics, allele mining, and diagnostic RenSeq (dRenSeq) were utilized to investigate the nature of resistances in S. okadae accessions. dRenSeq in resistant S. okadae accessions 7129, 7625, 3762, and a bulk of 20 resistant progeny confirmed the presence of full-length Rpi-vnt1.1 under stringent mapping conditions and corroborated allele mining results in the accessions 7129 and 7625 as well as Avr-vnt1 recognition in transient expression assays. In contrast, susceptible S. okadae accession 3761 and a bulk of 20 susceptible progeny lacked sequence homology in the 5' end compared to the functional Rpi-vnt1.1 gene. Further evaluation of S. okadae accessions with P. infestans isolates that have a broad spectrum of virulence demonstrated that, although S. okadae accessions 7129, 7625, and 7629 contain functional Rpi-vnt1.1, they also carry a novel resistance gene. We provide evidence that existing germplasm collections are important sources of novel resistances and that "omic" technologies such as dRenSeq-based genomics and effector-omics are efficacious tools to rapidly explore the diversity within these collections.
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