Evidence map›Paper›PMID 27303111›Full record

ArticleProceedings of SPIE--the International Society for Optical Engineering2016

Landmark Based Shape Analysis for Cerebellar Ataxia Classification and Cerebellar Atrophy Pattern Visualization.

Zhen Yang, S Mazdak Abulnaga, Aaron Carass, Kalyani Kansal, Bruno M Jedynak, Chiadi Onyike, Sarah H Ying, Jerry L Prince

Abstract read
In one paragraph

Article in Proceedings of SPIE--the International Society for Optical Engineering, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. A toolbox to visually explore cerebellar shape changes in cerebellar disease and dysfunction.Proceedings of SPIE--the International Society for Optical Engineering · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Zhen YangElectrical and Computer Engineering, Johns Hopkins University, Baltimore, MD 21218, USA.
S Mazdak AbulnagaElectrical and Computer Engineering, University of British Columbia, Vancouver, BC V6T 1Z4, Canada.
Aaron CarassElectrical and Computer Engineering, Johns Hopkins University, Baltimore, MD 21218, USA.
Kalyani KansalThe Johns Hopkins School of Medicine, Baltimore, MD 21287, USA.
Bruno M JedynakApplied Mathematics and Statistics, Johns Hopkins University, Baltimore, MD 21218, USA.
Chiadi OnyikeThe Johns Hopkins School of Medicine, Baltimore, MD 21287, USA.
Sarah H YingThe Johns Hopkins School of Medicine, Baltimore, MD 21287, USA.
Jerry L PrinceElectrical and Computer Engineering, Johns Hopkins University, Baltimore, MD 21218, USA; Applied Mathematics and Statistics, Johns Hopkins University, Baltimore, MD 21218, USA; The Johns Hopkins School of Medicine, Baltimore, MD 21287, USA.
Johns Hopkins University · USJohns Hopkins Medicine · USUniversity of British Columbia · CA

Funding

Automatic Cerebellar MRI Labeling In Health and DiseaseR01NS056307 · NINDS · JOHNS HOPKINS UNIVERSITY · PI PRINCE, JERRY L · 2006 to 2015
$3.0M
NINDS NIH HHS R01 NS056307
6 · The paper itself

Abstract

Cerebellar dysfunction can lead to a wide range of movement disorders. Studying the cerebellar atrophy pattern associated with different cerebellar disease types can potentially help in diagnosis, prognosis, and treatment planning. In this paper, we present a landmark based shape analysis pipeline to classify healthy control and different ataxia types and to visualize the characteristic cerebellar atrophy patterns associated with different types. A highly informative feature representation of the cerebellar structure is constructed by extracting dense homologous landmarks on the boundary surfaces of cerebellar sub-structures. A diagnosis group classifier based on this representation is built using partial least square dimension reduction and regularized linear discriminant analysis. The characteristic atrophy pattern for an ataxia type is visualized by sampling along the discriminant direction between healthy controls and the ataxia type. Experimental results show that the proposed method can successfully classify healthy controls and different ataxia types. The visualized cerebellar atrophy patterns were consistent with the regional volume decreases observed in previous studies, but the proposed method provides intuitive and detailed understanding about changes of overall size and shape of the cerebellum, as well as that of individual lobules.

Indexed as

atrophy patternCerebellar ataxialandmarkslinear discriminant analysismagnetic resonance imagespartial least squaresshape analysisvisualization

Identifiers

PMID27303111
PMCPMC4903164
OpenAlexW2303043349

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.