Evidence map›Paper›PMID 27302925›Full record

ArticleOncotarget2016

Phenotypic alteration of CD8+ T cells in chronic lymphocytic leukemia is associated with epigenetic reprogramming.

Jiazhu Wu, Xiaojing Xu, Eun-Joon Lee, Austin Y Shull, Lirong Pei, Farrukh Awan, Xiaoling Wang, Jeong-Hyeon Choi, Libin Deng, Hong-Bo Xin and 8 more

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 36 citations in OpenAlex.

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  8. A Cross Sectional Study on T Cells and Subsets in Chronic Lymphocytic Leukemia and their Association with Clinical Phenotype.Indian journal of hematology & blood transfusion : an official journal of Indian Society of Hematology and Blood Transfusion · 2021
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  18. Higher PD-1 expression concurrent with exhausted CD8+ T cells in patients withChinese journal of cancer research = Chung-kuo yen cheng yen chiu · 2017
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 7 institutions in 2 countries.

Jiazhu WuDepartment of Hematology, The First Affiliated Hospital of Nanjing Medical University, Jiangsu Province Hospital, Nanjing, Jiangsu, 210029, China.
Xiaojing XuGeorgia Prevention Institute, Augusta University, Augusta, GA 30912, USA.
Eun-Joon LeeGeorgia Cancer Center, Augusta University, Augusta, GA 30912, USA.
Austin Y ShullGeorgia Cancer Center, Augusta University, Augusta, GA 30912, USA.
Lirong PeiGeorgia Cancer Center, Augusta University, Augusta, GA 30912, USA.
Farrukh AwanDivision of Hematology, The Ohio State University, Columbus, OH, 43210, USA.
Xiaoling WangGeorgia Prevention Institute, Augusta University, Augusta, GA 30912, USA.
Jeong-Hyeon ChoiGeorgia Cancer Center, Augusta University, Augusta, GA 30912, USA.
Libin DengInstitute of Translational Medicine, Nanchang University, Nanchang 330031, China.
Hong-Bo XinInstitute of Translational Medicine, Nanchang University, Nanchang 330031, China.
Wenxun ZhongDepartment of Statistics, University of Georgia, Athens, GA 30602, USA.
Jinhua LiangDepartment of Hematology, The First Affiliated Hospital of Nanjing Medical University, Jiangsu Province Hospital, Nanjing, Jiangsu, 210029, China.
Yi MiaoDepartment of Hematology, The First Affiliated Hospital of Nanjing Medical University, Jiangsu Province Hospital, Nanjing, Jiangsu, 210029, China.
Yujie WuDepartment of Hematology, The First Affiliated Hospital of Nanjing Medical University, Jiangsu Province Hospital, Nanjing, Jiangsu, 210029, China.
Lei FanDepartment of Hematology, The First Affiliated Hospital of Nanjing Medical University, Jiangsu Province Hospital, Nanjing, Jiangsu, 210029, China.
Jianyong LiDepartment of Hematology, The First Affiliated Hospital of Nanjing Medical University, Jiangsu Province Hospital, Nanjing, Jiangsu, 210029, China.
Wei XuDepartment of Hematology, The First Affiliated Hospital of Nanjing Medical University, Jiangsu Province Hospital, Nanjing, Jiangsu, 210029, China.
Huidong ShiGeorgia Cancer Center, Augusta University, Augusta, GA 30912, USA.
Augusta University · USJiangsu Province Hospital · CNAugusta University Health · USNanjing Medical University · CNNanchang University · CNThe Ohio State University · USUniversity of Georgia · US

Funding

Epigenetic Basis of Obesity Induced Cardiovascular Disease and Type 2 DiabetesR01HL105689 · NHLBI · AUGUSTA UNIVERSITY · PI WANG, XIAOLING · 2011 to 2015
$3.3M
A GENOME-WIDE METHYLATION STUDY ON ESSENTIAL HYPERTENSIONR01HL104125 · NHLBI · AUGUSTA UNIVERSITY · PI WANG, XIAOLING · 2011 to 2015
$2.9M
Novel statistical tools for cell line specific epigenetic analysisR01GM113242 · NIGMS · UNIVERSITY OF GEORGIA · PI ZHONG, WENXUAN · 2014 to 2017
$1.4M
Epigenetic regulation of T-cell dysfunction in chronic lymphocytic leukemiaR21CA185833 · NCI · AUGUSTA UNIVERSITY · PI SHI, HUIDONG · 2014 to 2015
$362k
NCI NIH HHS R21 CA185833NHLBI NIH HHS R01 HL104125NHLBI NIH HHS R01 HL105689NIGMS NIH HHS R01 GM113242
6 · The paper itself

Abstract

Immunosuppression is a prevalent clinical feature in chronic lymphocytic leukemia (CLL) patients, with many patients demonstrating increased susceptibility to infections as well as increased failure of an antitumor immune response. However, much is currently not understood regarding the precise mechanisms that attribute to this immunosuppressive phenotype in CLL. To provide further clarity to this particular phenomenon, we analyzed the T-cell profile of CLL patient samples within a large cohort and observed that patients with an inverted CD4/CD8 ratio had a shorter time to first treatment as well as overall survival. These observations coincided with higher expression of the immune checkpoint receptor PD-1 in CLL patient CD8+ T cells when compared to age-matched healthy donors. Interestingly, we discovered that increased PD-1 expression in CD8+ T cells corresponds with decreased DNA methylation levels in a distal upstream locus of the PD-1 gene PDCD1. Further analysis using luciferase reporter assays suggests that the identified PDCD1 distal upstream region acts as an enhancer for PDCD1 transcription and this region becomes demethylated during activation of naïve CD8+ T cells by anti-CD3/anti-CD28 antibodies and IL2. Finally, we conducted a genome-wide DNA methylation analysis comparing CD8+ T cells from CLL patients against healthy donors and identified additional differentially methylated genes with known immune regulatory functions including CCR6 and KLRG1. Taken together, our findings reveal the occurrence of epigenetic reprogramming taking place within CLL patient CD8+ T cells and highlight the potential mechanism of how immunosuppression is accomplished in CLL.

Indexed as

Epigenesis, GeneticAdultAgedAged, 80 and overCase-Control StudiesCD8-Positive T-LymphocytesDNA MethylationFemaleGene Expression Regulation, LeukemicHumansInterleukin-2Jurkat CellsLeukemia, Lymphocytic, Chronic, B-CellMaleMiddle AgedPhenotypeIL2 protein, humanInterleukin-2CD8+ T-cellschronic lymphocytic leukemiaDNA methylationPD-1

Identifiers

PMID27302925
PMCPMC5130028
OpenAlexW2409183885

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.