Evidence map›Paper›PMID 27301553›Full record

ArticleMalaria journal2016

Plasmodium falciparum parasite population structure and gene flow associated to anti-malarial drugs resistance in Cambodia.

Ankit Dwivedi, Nimol Khim, Christelle Reynes, Patrice Ravel, Laurence Ma, Magali Tichit, Christiane Bourchier, Saorin Kim, Dany Dourng, Chanra Khean and 8 more

Open access · goldAbstract read
In one paragraph

Article in Malaria journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 20 citations in OpenAlex.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 8 institutions in 2 countries.

Ankit DwivediInstitut de Biologie Computationnelle (IBC), Montpellier, France.
Nimol KhimMalaria Molecular Epidemiology Unit, Institut Pasteur in Cambodia, Phnom Penh, Cambodia.
Christelle ReynesLaboratoire de Biostatistiques, Informatique et Physique Pharmaceutique, UFR Pharmacie, Université de Montpellier, Montpellier, France.
Patrice RavelIRCM-INSERM U1194, Institut de Recherche en Cancérologie de Montpellier, Montpellier, France.
Laurence MaGenopole Sequencing Platform, Institut Pasteur, Paris, France.
Magali TichitGenopole Sequencing Platform, Institut Pasteur, Paris, France.
Christiane BourchierGenopole Sequencing Platform, Institut Pasteur, Paris, France.
Saorin KimMalaria Molecular Epidemiology Unit, Institut Pasteur in Cambodia, Phnom Penh, Cambodia.
Dany DourngMalaria Molecular Epidemiology Unit, Institut Pasteur in Cambodia, Phnom Penh, Cambodia.
Chanra KheanMalaria Molecular Epidemiology Unit, Institut Pasteur in Cambodia, Phnom Penh, Cambodia.
Pheaktra ChimMalaria Molecular Epidemiology Unit, Institut Pasteur in Cambodia, Phnom Penh, Cambodia.
Sovannaroth SivNational Centre for Parasitology, Entomology, and Malaria Control, Phnom Penh, Cambodia.
Roger FrutosUMR 17, Intertryp, Cirad-IRD, Campus International de Baillarguet, Montpellier, France.
Dysoley LekNational Centre for Parasitology, Entomology, and Malaria Control, Phnom Penh, Cambodia.
Odile Mercereau-PuijalonParasite Molecular Immunology Unit, Institut Pasteur, Paris, France.
Frédéric ArieyParasite Molecular Immunology Unit, Institut Pasteur, Paris, France.
Didier MenardMalaria Molecular Epidemiology Unit, Institut Pasteur in Cambodia, Phnom Penh, Cambodia. dmenard@pasteur-kh.org.
Emmanuel CornillotInstitut de Biologie Computationnelle (IBC), Montpellier, France. emmanuel.cornillot@umontpellier.fr.
Institut Pasteur du Cambodge · KHInstitut Pasteur · FRCambodia National Malaria Center · KHInstitut de Recherche en Cancérologie de Montpellier · FRCentre de Coopération Internationale en Recherche Agronomique pour le Développement · FRGenopole (France) · FRInstitut de Génomique Fonctionnelle · FRUniversité de Montpellier · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundWestern Cambodia is recognized as the epicentre of emergence of Plasmodium falciparum multi-drug resistance. The emergence of artemisinin resistance has been observed in this area since 2008-2009 and molecular signatures associated to artemisinin resistance have been characterized in k13 gene. At present, one of the major threats faced, is the possible spread of Asian artemisinin resistant parasites over the world threatening millions of people and jeopardizing malaria elimination programme efforts. To anticipate the diffusion of artemisinin resistance, the identification of the P. falciparum population structure and the gene flow among the parasite population in Cambodia are essential.

methodsTo this end, a mid-throughput PCR-LDR-FMA approach based on LUMINEX technology was developed to screen for genetic barcode in 533 blood samples collected in 2010-2011 from 16 health centres in malaria endemics areas in Cambodia.

resultsBased on successful typing of 282 samples, subpopulations were characterized along the borders of the country. Each 11-loci barcode provides evidence supporting allele distribution gradient related to subpopulations and gene flow. The 11-loci barcode successfully identifies recently emerging parasite subpopulations in western Cambodia that are associated with the C580Y dominant allele for artemisinin resistance in k13 gene. A subpopulation was identified in northern Cambodia that was associated to artemisinin (R539T resistant allele of k13 gene) and mefloquine resistance.

conclusionsThe gene flow between these subpopulations might have driven the spread of artemisinin resistance over Cambodia.

Indexed as

Drug ResistanceGene FlowGenetic VariationAntimalarialsCambodiaDNA Barcoding, TaxonomicGenotypeHumansMalaria, FalciparumPlasmodium falciparumAntimalarials

Identifiers

PMID27301553
PMCPMC4908689
OpenAlexW2432121949

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.