ArticlePloS one2016
Chicken rRNA Gene Cluster Structure.
Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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15 citing papers in PubMed.
- In silico mapping of non-canonical DNA structures across the human ribosomal DNA locus.G3 (Bethesda, Md.) · 2026Article
- Genetic Signatures of Competitive Performance in Burmese Gamecocks: A Transcriptomic Analysis.Biology · 2025Article
- Description of the complete rDNA repeat unit structure ofComparative cytogenetics · 2024Article
- Single Copies of the 5S rRNA Inserted into 45S rDNA Intergenic Spacers in the Genomes of Nototheniidae (Perciformes, Actinopterygii).International journal of molecular sciences · 2023Article
- Chromosome-Length Assembly of the Baikal Seal (Genes · 2023Article
- Article
- 45S rDNA Repeats of Turtles and Crocodiles Harbor a Functional 5S rRNA Gene Specifically Expressed in Oocytes.Molecular biology and evolution · 2022Article
- Fourth Report on Chicken Genes and Chromosomes 2022.Cytogenetic and genome research · 2022Review
- Analyses of the Updated "Animal rDNA Loci Database" with an Emphasis on Its New Features.International journal of molecular sciences · 2021Article
- Ageing European lobsters (Evolutionary applications · 2021Article
- The distribution of 45S rDNA sites in bird chromosomes suggests multiple evolutionary histories.Genetics and molecular biology · 2020Article
- Structure of the intergenic spacers in chicken ribosomal DNA.Genetics, selection, evolution : GSE · 2019Article
- Sequence properties of certain GC rich avian genes, their origins and absence from genome assemblies: case studies.BMC genomics · 2019Article
- Article
- Comparative Cytogenetics between Two Important Songbird, Models: The Zebra Finch and the Canary.PloS one · 2017Article
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Authors and funding
8 authors.
Funding
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Abstract
Ribosomal RNA (rRNA) genes, whose activity results in nucleolus formation, constitute an extremely important part of genome. Despite the extensive exploration into avian genomes, no complete description of avian rRNA gene primary structure has been offered so far. We publish a complete chicken rRNA gene cluster sequence here, including 5'ETS (1836 bp), 18S rRNA gene (1823 bp), ITS1 (2530 bp), 5.8S rRNA gene (157 bp), ITS2 (733 bp), 28S rRNA gene (4441 bp) and 3'ETS (343 bp). The rRNA gene cluster sequence of 11863 bp was assembled from raw reads and deposited to GenBank under KT445934 accession number. The assembly was validated through in situ fluorescent hybridization analysis on chicken metaphase chromosomes using computed and synthesized specific probes, as well as through the reference assembly against de novo assembled rRNA gene cluster sequence using sequenced fragments of BAC-clone containing chicken NOR (nucleolus organizer region). The results have confirmed the chicken rRNA gene cluster validity.
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