Evidence map›Paper›PMID 27299301›Full record

ArticlePloS one2016

Mitochondrial DNA Rearrangement Spectrum in Brain Tissue of Alzheimer's Disease: Analysis of 13 Cases.

Yucai Chen, Changsheng Liu, William Davis Parker, Hongyi Chen, Thomas G Beach, Xinhua Liu, Geidy E Serrano, Yanfen Lu, Jianjun Huang, Kunfang Yang and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it, 21 citations in OpenAlex.

  1. Pooled it
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  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Yucai ChenNeurology Department, Shanghai Children's Hospital, Shanghai Jiao Tong University, Shanghai, China.
Changsheng LiuSoftGenetics LLC, State College, United States of America.
William Davis ParkerPediatric Department, University of Illinois at Chicago, Peoria, United States of America.
Hongyi ChenPediatric Department, University of Illinois at Chicago, Peoria, United States of America.
Thomas G BeachBanner Sun Health Research Institute, Sun City, United States of America.
Xinhua LiuSoftGenetics LLC, State College, United States of America.
Geidy E SerranoBanner Sun Health Research Institute, Sun City, United States of America.
Yanfen LuNeurology Department, Shanghai Children's Hospital, Shanghai Jiao Tong University, Shanghai, China.
Jianjun HuangNeurology Department, Shanghai Children's Hospital, Shanghai Jiao Tong University, Shanghai, China.
Kunfang YangNeurology Department, Shanghai Children's Hospital, Shanghai Jiao Tong University, Shanghai, China.
Chunmei WangNeurology Department, Shanghai Children's Hospital, Shanghai Jiao Tong University, Shanghai, China.
Shanghai Jiao Tong University · CNBanner Sun Health Research Institute · USPeoria campus of the University of Illinois System · USShanghai Children's Hospital · CN

Funding

Research Education ComponentP30AG019610 · NIA · SUN HEALTH RESEARCH INSTITUTE · PI REIMAN, ERIC MICHAEL · 2001 to 2020
$32.5M
National Brain and Tissue Resource for Parkinson's Disease and Related DisordersU24NS072026 · NINDS · BANNER SUN HEALTH RESEARCH INSTITUTE · PI BEACH, THOMAS G · 2011 to 2015
$7.8M
NIA NIH HHS P30 AG019610NINDS NIH HHS U24 NS072026
6 · The paper itself

Abstract

backgroundMitochondrial dysfunction may play a central role in the pathologic process of Alzheimer's disease (AD), but there is still a scarcity of data that directly links the pathology of AD with the alteration of mitochondrial DNA. This study aimed to provide a comprehensive assessment of mtDNA rearrangement events in AD brain tissue. PATIENTS AND

methodsPostmortem frozen human brain cerebral cortex samples were obtained from the Banner Sun Health Research Institute Brain and Body Donation Program, Sun City, AZ. Mitochondria were isolated and direct sequence by using MiSeq®, and analyzed by relative software.

resultsThree types of mitochondrial DNA (mtDNA) rearrangements have been seen in post mortem human brain tissue from patients with AD and age matched control. These observed rearrangements include a deletion, F-type rearrangement, and R-type rearrangement. We detected a high level of mtDNA rearrangement in brain tissue from cognitively normal subjects, as well as the patients with Alzheimer's disease (AD). The rate of rearrangements was calculated by dividing the number of positive rearrangements by the coverage depth. The rearrangement rate was significantly higher in AD brain tissue than in control brain tissue (17.9%versus 6.7%; p = 0.0052). Of specific types of rearrangement, deletions were markedly increased in AD (9.2% versus 2.3%; p = 0.0005).

conclusionsOur data showed that failure of mitochondrial DNA in AD brain might be important etiology of AD pathology.

Indexed as

Gene RearrangementAgedAged, 80 and overAlzheimer DiseaseBrainDNA, MitochondrialHumansMitochondriaPolymorphism, Single NucleotideDNA, Mitochondrial

Identifiers

PMID27299301
PMCPMC4907522
OpenAlexW2421657307

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.