Evidence map›Paper›PMID 27298595›Full record

ArticleThe plant pathology journal2016

Natural Occurrence of Tomato leaf curl New Delhi virus in Iranian Cucurbit Crops.

Sara Yazdani-Khameneh, Samaneh Aboutorabi, Majid Shoori, Azin Aghazadeh, Parastoo Jahanshahi, Alireza Golnaraghi, Mojdeh Maleki

Open access · goldAbstract read
In one paragraph

Article in The plant pathology journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
8.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 45 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Sara Yazdani-KhamenehDepartment of Plant Pathology, College of Agriculture and Natural Resources, Science and Research Branch, Islamic Azad University (IAU), Tehran P.O. Box 14515-775, Iran.
Samaneh AboutorabiDepartment of Plant Protection, College of Agriculture, Varamin-Pishva Branch, Islamic Azad University (IAU), Varamin 33817-7489, Iran.
Majid ShooriDepartment of Plant Protection, College of Agriculture, Varamin-Pishva Branch, Islamic Azad University (IAU), Varamin 33817-7489, Iran.
Azin AghazadehDepartment of Plant Protection, College of Agriculture, Varamin-Pishva Branch, Islamic Azad University (IAU), Varamin 33817-7489, Iran.
Parastoo JahanshahiDepartment of Plant Protection, College of Agriculture, Varamin-Pishva Branch, Islamic Azad University (IAU), Varamin 33817-7489, Iran.
Alireza GolnaraghiDepartment of Plant Protection, College of Agriculture and Natural Resources, Science and Research Branch, Islamic Azad University (IAU), Tehran P.O. Box 14515-775, Iran.
Mojdeh MalekiDepartment of Plant Protection, College of Agriculture, Varamin-Pishva Branch, Islamic Azad University (IAU), Varamin 33817-7489, Iran.
Islamic Azad University of Varamin · IRIslamic Azad University, Science and Research Branch · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The main areas for field-grown vegetable production in Iran were surveyed during the years of 2012-2014 to determine the occurrence of begomoviruses infecting these crops. A total of 787 leaf samples were collected from vegetables and some other host plants showing virus-like symptoms and tested by an enzyme-linked immunosorbent assay (ELISA) using polyclonal antibodies produced against Tomato yellow leaf curl virus (TYLCV). According to the ELISA results, 81 samples (10.3%) positively reacted with the virus antibodies. Begomovirus infections were confirmed by polymerase chain reaction (PCR) using previously described TYLCV-specific primer pair TYLCV-Sar/TYLCV-Isr or universal primer pair Begomo-F/Begomo-R. The PCR tests using the primer pair TYLCV-Sar/TYLCV-Isr resulted in the amplification of the expected fragments of ca. 0.67-kb in size for ELISA-positive samples tested from alfalfa, pepper, spinach and tomato plants, confirming the presence of TYLCV. For one melon sample, having a week reaction in ELISA and no reaction in PCR using TYLCV-specific primers, the PCR reaction using the primer pair Begomo-F/Begomo-R resulted in the amplification fragments of the expected size of ca. 2.8 kb. The nucleotide sequences of the DNA amplicons derived from the isolate, Kz-Me198, were determined and compared with other sequences available in GenBank. BLASTN analysis confirmed the begomovirus infection of the sample and showed 99% identities with Tomato leaf curl New Delhi virus (ToLCNDV); phylogenetic analysis supported the results of the database searches. This study reports the natural occurrence of TYLCV in different hosts in Iran. Our results also reveal the emergence of ToLCNDV in Iranian cucurbit crops.

Indexed as

BegomovirusphylogenyTomato leaf curl New Delhi virusTomato yellow leaf curl virusvegetables

Identifiers

PMID27298595
PMCPMC4892816
OpenAlexW2432263181

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.