Evidence map›Paper›PMID 27298380›Full record

ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2016

A gene-based map of the Nod factor-independent Aeschynomene evenia sheds new light on the evolution of nodulation and legume genomes.

Clémence Chaintreuil, Ronan Rivallan, David J Bertioli, Christophe Klopp, Jérôme Gouzy, Brigitte Courtois, Philippe Leleux, Guillaume Martin, Jean-François Rami, Djamel Gully and 12 more

Open access · goldAbstract read
In one paragraph

Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
8.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 28 citations in OpenAlex.

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  6. A collection of novelFrontiers in plant science · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 11 institutions in 2 countries.

Clémence ChaintreuilIRD, UMR LSTM, Campus International de Baillarguet, F-34398 Montpellier, France.
Ronan RivallanCIRAD, UMR AGAP, Campus de Lavalette, F-34398 Montpellier, France.
David J BertioliUniversity of Brasília, Institute of Biological Sciences, Campus Darcy Ribeiro, 70910-900 Brasília, DF, Brazil.
Christophe KloppINRA, Plateforme GenoToul Bioinfo, UR 875, INRA Auzeville, F-31326 Castanet-Tolosan, France.
Jérôme GouzyINRA, UMR441 LIPM, INRA Auzeville, F-31326 Castanet-Tolosan, France.
Brigitte CourtoisCIRAD, UMR AGAP, Campus de Lavalette, F-34398 Montpellier, France.
Philippe LeleuxIRD, UMR LSTM, Campus International de Baillarguet, F-34398 Montpellier, France INRA, Plateforme GenoToul Bioinfo, UR 875, INRA Auzeville, F-31326 Castanet-Tolosan, France.
Guillaume MartinCIRAD, UMR AGAP, Campus de Lavalette, F-34398 Montpellier, France.
Jean-François RamiCIRAD, UMR AGAP, Campus de Lavalette, F-34398 Montpellier, France.
Djamel GullyIRD, UMR LSTM, Campus International de Baillarguet, F-34398 Montpellier, France.
Hugues ParrinelloMGX-Montpellier GenomiX, Institut de Génomique Fonctionnelle, F-34094 Montpellier, France.
Dany SéveracMGX-Montpellier GenomiX, Institut de Génomique Fonctionnelle, F-34094 Montpellier, France.
Delphine PatrelIRD, UMR LSTM, Campus International de Baillarguet, F-34398 Montpellier, France IRD, Centre IRD de Montpellier France Sud, F-34394 Montpellier, France.
Joël FardouxIRD, UMR LSTM, Campus International de Baillarguet, F-34398 Montpellier, France.
William RibièreIRD, Centre IRD de Montpellier France Sud, F-34394 Montpellier, France.
Marc BoursotIRD, UMR LSTM, Campus International de Baillarguet, F-34398 Montpellier, France.
Fabienne CartieauxIRD, UMR LSTM, Campus International de Baillarguet, F-34398 Montpellier, France.
Pierre CzernicIRD, UMR LSTM, Campus International de Baillarguet, F-34398 Montpellier, France.
Pascal RatetInstitute of Plant Sciences Paris Saclay IPS2, CNRS, INRA, Université Paris-Sud, Université Evry, Université Paris-Saclay, 91405 Orsay, France Institute of Plant Sciences Paris-Saclay IPS2, Paris Diderot, Sorbonne Paris-Cité, 91405 Orsay, France.
Pierre MournetCIRAD, UMR AGAP, Campus de Lavalette, F-34398 Montpellier, France.
Eric GiraudIRD, UMR LSTM, Campus International de Baillarguet, F-34398 Montpellier, France.
Jean-François ArrighiIRD, UMR LSTM, Campus International de Baillarguet, F-34398 Montpellier, France jean-francois.arrighi@ird.fr.
Laboratoire des Symbioses Tropicales et Méditerranéennes · FRAgropolis International · FRCentre de Coopération Internationale en Recherche Agronomique pour le Développement · FRCentre de Recherche en Neurobiologie - Neurophysiologie de Marseille · FRGenetic Improvement and Adaptation of Mediterranean and Tropical Plants · FRInstitut de Génomique Fonctionnelle · FRInstitut de Recherche pour le Développement · FRInstitut des Sciences des Plantes de Paris Saclay · FRLaboratoire des Interactions Plantes Micro-Organismes · FRMontpellier GenomiX · FRUniversidade de Brasília · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Aeschynomene evenia has emerged as a new model legume for the deciphering of the molecular mechanisms of an alternative symbiotic process that is independent of the Nod factors. Whereas most of the research on nitrogen-fixing symbiosis, legume genetics and genomics has so far focused on Galegoid and Phaseolid legumes, A. evenia falls in the more basal and understudied Dalbergioid clade along with peanut (Arachis hypogaea). To provide insights into the symbiotic genes content and the structure of the A. evenia genome, we established a gene-based genetic map for this species. Firstly, an RNAseq analysis was performed on the two parental lines selected to generate a F2 mapping population. The transcriptomic data were used to develop molecular markers and they allowed the identification of most symbiotic genes. The resulting map comprised 364 markers arranged in 10 linkage groups (2n = 20). A comparative analysis with the sequenced genomes of Arachis duranensis and A. ipaensis, the diploid ancestors of peanut, indicated blocks of conserved macrosynteny. Altogether, these results provided important clues regarding the evolution of symbiotic genes in a Nod factor-independent context. They provide a basis for a genome sequencing project and pave the way for forward genetic analysis of symbiosis in A. evenia.

Indexed as

Evolution, MolecularGenetic LinkageGenome, PlantFabaceaeGenes, PlantPlant Root NodulationPolymorphism, GeneticSymbiosisTranscriptomeAeschynomene eveniacomparative genomicsgenetic maplegumesymbiosis

Identifiers

PMID27298380
PMCPMC4991833
OpenAlexW2429493453

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.