Evidence map›Paper›PMID 27297123›Full record

ArticleScientific reports2016

Novel high throughput pooled shRNA screening identifies NQO1 as a potential drug target for host directed therapy for tuberculosis.

Qing Li, Ahmad F Karim, Xuedong Ding, Biswajit Das, Curtis Dobrowolski, Richard M Gibson, Miguel E Quiñones-Mateu, Jonathan Karn, Roxana E Rojas

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. TBK1-NQO1 negative feedback loop regulates antiviral innate immunity.Cell communication and signaling : CCS · 2026
    Article
  3. Macrophage states and polarization duringFrontiers in cellular and infection microbiology · 2026
    Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. NQO1 Binds and Supports SIRT1 Function.Frontiers in pharmacology · 2021
    Article
  11. Article
  12. Article
  13. Estrogen receptor-1 is a key regulator of HIV-1 latency that imparts gender-specific restrictions on the latent reservoir.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Qing LiDepartment of Medicine, Case Western Reserve University &University Hospitals, Cleveland, Ohio, United States of America.
Ahmad F KarimDepartment of Molecular Biology and Microbiology, Case Western Reserve University &University Hospitals, Cleveland, Ohio, United States of America.
Xuedong DingDepartment of Medicine, Case Western Reserve University &University Hospitals, Cleveland, Ohio, United States of America.
Biswajit DasDepartment of Molecular Biology and Microbiology, Case Western Reserve University &University Hospitals, Cleveland, Ohio, United States of America.
Curtis DobrowolskiDepartment of Molecular Biology and Microbiology, Case Western Reserve University &University Hospitals, Cleveland, Ohio, United States of America.
Richard M GibsonUniversity Hospitals Translational Laboratory, University Hospitals Case Medical Center, Cleveland, Ohio, United States of America.
Miguel E Quiñones-MateuUniversity Hospitals Translational Laboratory, University Hospitals Case Medical Center, Cleveland, Ohio, United States of America.
Jonathan KarnDepartment of Molecular Biology and Microbiology, Case Western Reserve University &University Hospitals, Cleveland, Ohio, United States of America.
Roxana E RojasDepartment of Molecular Biology and Microbiology, Case Western Reserve University &University Hospitals, Cleveland, Ohio, United States of America.
Case Western Reserve University · USUniversity Hospitals Case Medical Center · USUniversity Hospitals of Cleveland · US

Funding

TUMOR METABOLISM PROGRAMP30CA043703 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI MARK R CHANCE · 1987 to 2026
$142.3M
WG3: HIV, Co-infections and Co-morbiditiesP30AI036219 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI Sharon L. Hillier, JONATHAN KARN · 1994 to 2026
$50.0M
TISSUE CULTURE AND HYBRIDOMA MODULEP30EY011373 · NEI · CASE WESTERN RESERVE UNIVERSITY · PI Irina A Pikuleva · 1997 to 2026
$17.7M
HETEROGENEITY OF TCELLS IN M TUBERCULOSIS INFECTIONR01AI027243 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI BOOM, W. HENRY · 1989 to 2016
$5.5M
Manipulating Epigenetic Control Mechanisms to Control HIV TranscriptionDP1DA028869 · NIDA · CASE WESTERN RESERVE UNIVERSITY · PI KARN, JONATHAN · 2009 to 2013
$3.9M
Role of TLR2 engagement on CD4+ T cells in immunity to M. tuberculosisR21AI099494 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI ROJAS, ROXANA E. · 2012 to 2013
$432k
NCI NIH HHS P30 CA043703NEI NIH HHS P30 EY011373NIAID NIH HHS P30 AI036219NIAID NIH HHS R01 AI027243NIAID NIH HHS R21 AI099494NIDA NIH HHS DP1 DA028869
6 · The paper itself

Abstract

unlabelledChemical regulation of macrophage function is one key strategy for developing host-directed adjuvant therapies for tuberculosis (TB). A critical step to develop these therapies is the identification and characterization of specific macrophage molecules and pathways with a high potential to serve as drug targets. Using a barcoded lentivirus-based pooled short-hairpin RNA (shRNA) library combined with next generation sequencing, we identified 205 silenced host genes highly enriched in mycobacteria-resistant macrophages. Twenty-one of these "hits" belonged to the oxidoreductase functional category. NAD(P)H: quinone oxidoreductase 1 (NQO1) was the top oxidoreductase "hit". NQO1 expression was increased after mycobacterial infection, and NQO1 knockdown increased macrophage differentiation, NF-κB activation, and the secretion of pro-inflammatory cytokines TNF-α and IL-1β in response to infection. This suggests that mycobacteria hijacks NQO1 to down-regulate pro-inflammatory and anti-bacterial functions. The competitive inhibitor of NQO1 dicoumarol synergized with rifampin to promote intracellular killing of mycobacteria. Thus, NQO1 is a new host target in mycobacterial infection that could potentially be exploited to increase antibiotic efficacy in vivo. Our findings also suggest that pooled shRNA libraries could be valuable tools for genome-wide screening in the search for novel druggable host targets for adjunctive TB therapies.

Indexed as

Antitubercular AgentsDicumarolDrug SynergismEnzyme InhibitorsGene Expression RegulationGene LibraryHigh-Throughput Nucleotide SequencingHigh-Throughput Screening AssaysHost-Pathogen InteractionsHumansInterleukin-1betaMacrophagesMycobacterium tuberculosisNAD(P)H Dehydrogenase (Quinone)NF-kappa BPrimary Cell CultureAntitubercular AgentsDicumarolEnzyme InhibitorsIL1B protein, humanInterleukin-1betaNAD(P)H Dehydrogenase (Quinone)NF-kappa BNQO1 protein, humanRifampinRNA, Small InterferingTumor Necrosis Factor-alpha

Identifiers

PMID27297123
PMCPMC4906352
OpenAlexW2422341705

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.