Evidence map›Paper›PMID 27296413›Full record

ArticleBMC evolutionary biology2016

Evidence of positive selection associated with placental loss in tiger sharks.

Dominic G Swift, Luke T Dunning, Javier Igea, Edward J Brooks, Catherine S Jones, Leslie R Noble, Adam Ciezarek, Emily Humble, Vincent Savolainen

Abstract read
In one paragraph

Article in BMC evolutionary biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Dominic G SwiftDepartment of Life Sciences, Imperial College London, Silwood Park Campus, Buckhurst Road, Berkshire, SL5 7PY, UK. dominic.swift@tamucc.edu.
Luke T DunningDepartment of Animal and Plant Sciences, University of Sheffield, Sheffield, S10 2TN, UK.
Javier IgeaDepartment of Plant Sciences, University of Cambridge, Downing Street, Cambridge, CB2 3EQ, UK.
Edward J BrooksShark Research & Conservation Program, Cape Eleuthera Institute, PO Box EL - 26029, Eleuthera, the Bahamas.
Catherine S JonesInstitute of Biological and Environmental Sciences, School of Biological Sciences, University of Aberdeen, Zoology Building, Tillydrone Avenue, Aberdeen, AB24 2TZ, Scotland, UK.
Leslie R NobleInstitute of Biological and Environmental Sciences, School of Biological Sciences, University of Aberdeen, Zoology Building, Tillydrone Avenue, Aberdeen, AB24 2TZ, Scotland, UK.
Adam CiezarekDepartment of Life Sciences, Imperial College London, Silwood Park Campus, Buckhurst Road, Berkshire, SL5 7PY, UK.
Emily HumbleDepartment of Animal Behaviour, University of Bielefeld, Postfach 100131, 33501, Bielefeld, Germany.
Vincent SavolainenDepartment of Life Sciences, Imperial College London, Silwood Park Campus, Buckhurst Road, Berkshire, SL5 7PY, UK. v.savolainen@imperial.ac.uk.ORCID 0000-0001-5350-9984

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAll vertebrates initially feed their offspring using yolk reserves. In some live-bearing species these yolk reserves may be supplemented with extra nutrition via a placenta. Sharks belonging to the Carcharhinidae family are all live-bearing, and with the exception of the tiger shark (Galeocerdo cuvier), develop placental connections after exhausting yolk reserves. Phylogenetic relationships suggest the lack of placenta in tiger sharks is due to secondary loss. This represents a dramatic shift in reproductive strategy, and is likely to have left a molecular footprint of positive selection within the genome.

resultsWe sequenced the transcriptome of the tiger shark and eight other live-bearing shark species. From this data we constructed a time-calibrated phylogenetic tree estimating the tiger shark lineage diverged from the placental carcharhinids approximately 94 million years ago. Along the tiger shark lineage, we identified five genes exhibiting a signature of positive selection. Four of these genes have functions likely associated with brain development (YWHAE and ARL6IP5) and sexual reproduction (VAMP4 and TCTEX1D2).

conclusionsOur results indicate the loss of placenta in tiger sharks may be associated with subsequent adaptive changes in brain development and sperm production.

Indexed as

PlacentaSelection, GeneticAnimalsBase SequenceFemaleMalePhylogenyPregnancyReproductionSharksTranscriptomeCarcharhinidsElasmobranchsGaleocerdoPlacentaPositive selectionReproductionRNA-SeqTranscriptomeViviparous

Identifiers

PMID27296413
PMCPMC4906603

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.