Evidence map›Paper›PMID 27296167›Full record

ArticleBMC genomics2016

Molecular pathways associated with the nutritional programming of plant-based diet acceptance in rainbow trout following an early feeding exposure.

Mukundh N Balasubramanian, Stephane Panserat, Mathilde Dupont-Nivet, Edwige Quillet, Jerome Montfort, Aurelie Le Cam, Francoise Medale, Sadasivam J Kaushik, Inge Geurden

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
18.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 122 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Mukundh N BalasubramanianINRA, UR1067 NUMEA Nutrition, Métabolisme et Aquaculture, Pôle d'Hydrobiologie INRA, 64310, Saint Pée-sur-Nivelle, France.
Stephane PanseratINRA, UR1067 NUMEA Nutrition, Métabolisme et Aquaculture, Pôle d'Hydrobiologie INRA, 64310, Saint Pée-sur-Nivelle, France.
Mathilde Dupont-NivetINRA, UMR1313 GABI Génétique Animale et Biologie Intégrative, 78350, Jouy-en-Josas, France.
Edwige QuilletINRA, UMR1313 GABI Génétique Animale et Biologie Intégrative, 78350, Jouy-en-Josas, France.
Jerome MontfortINRA, UR 1037 Laboratoire de Physiologie et Génomique des Poissons (LPGP), Rennes, France.
Aurelie Le CamINRA, UR 1037 Laboratoire de Physiologie et Génomique des Poissons (LPGP), Rennes, France.
Francoise MedaleINRA, UR1067 NUMEA Nutrition, Métabolisme et Aquaculture, Pôle d'Hydrobiologie INRA, 64310, Saint Pée-sur-Nivelle, France.
Sadasivam J KaushikINRA, UR1067 NUMEA Nutrition, Métabolisme et Aquaculture, Pôle d'Hydrobiologie INRA, 64310, Saint Pée-sur-Nivelle, France.
Inge GeurdenINRA, UR1067 NUMEA Nutrition, Métabolisme et Aquaculture, Pôle d'Hydrobiologie INRA, 64310, Saint Pée-sur-Nivelle, France. inge.geurden@st-pee.inra.fr.
Nutrition Metabolism Aquaculture · FRAgroParisTech · FRFish Physiology and Genomics Institute · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe achievement of sustainable feeding practices in aquaculture by reducing the reliance on wild-captured fish, via replacement of fish-based feed with plant-based feed, is impeded by the poor growth response seen in fish fed high levels of plant ingredients. Our recent strategy to nutritionally program rainbow trout by early short-term exposure to a plant-based (V) diet versus a control fish-based (M) diet at the first-feeding fry stage when the trout fry start to consume exogenous feed, resulted in remarkable improvements in feed intake, growth and feed utilization when the same fish were challenged with the diet V (V-challenge) at the juvenile stage, several months following initial exposure. We employed microarray expression analysis at the first-feeding and juvenile stages to deduce the mechanisms associated with the nutritional programming of plant-based feed acceptance in trout.

resultsTranscriptomic analysis was performed on rainbow trout whole fry after 3 weeks exposure to either diet V or diet M at the first feeding stage (3-week), and in the whole brain and liver of juvenile trout after a 25 day V-challenge, using a rainbow trout custom oligonucleotide microarray. Overall, 1787 (3-week + Brain) and 924 (3-week + Liver) mRNA probes were affected by the early-feeding exposure. Gene ontology and pathway analysis of the corresponding genes revealed that nutritional programming affects pathways of sensory perception, synaptic transmission, cognitive processes and neuroendocrine peptides in the brain; whereas in the liver, pathways mediating intermediary metabolism, xenobiotic metabolism, proteolysis, and cytoskeletal regulation of cell cycle are affected. These results suggest that the nutritionally programmed enhanced acceptance of a plant-based feed in rainbow trout is driven by probable acquisition of flavour and feed preferences, and reduced sensitivity to changes in hepatic metabolic and stress pathways.

conclusionsThis study outlines the molecular mechanisms in trout brain and liver that accompany the nutritional programming of plant-based diet acceptance in trout, reinforces the notion of the first-feeding stage in oviparous fish as a critical window for nutritional programming, and provides support for utilizing this strategy to achieve improvements in sustainability of feeding practices in aquaculture.

Indexed as

Animal FeedGene Expression RegulationGene Regulatory NetworksAnimal Nutritional Physiological PhenomenaAnimalsComputational BiologyGene Expression ProfilingGene OntologyGenetic Association StudiesOncorhynchus mykissOrgan SpecificityReproducibility of ResultsTranscriptome

Identifiers

PMID27296167
PMCPMC4907080
OpenAlexW2437349461

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.