Evidence map›Paper›PMID 27294968›Full record

ArticleJournal of plant research2016

Genes encoding Δ(8)-sphingolipid desaturase from various plants: identification, biochemical functions, and evolution.

Shu-Fen Li, Guo-Jun Zhang, Xue-Jin Zhang, Jin-Hong Yuan, Chuan-Liang Deng, Zan-Min Hu, Wu-Jun Gao

Abstract read
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In one paragraph

Article in Journal of plant research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Plant-UniquePlants (Basel, Switzerland) · 2019
    Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Shu-Fen LiCollege of Life Sciences, Henan Normal University, Xinxiang, 453007, China.
Guo-Jun ZhangSchool of Basic Medical Sciences, Xinxiang Medical University, Xinxiang, 453003, China.
Xue-Jin ZhangCollege of Life Sciences, Henan Normal University, Xinxiang, 453007, China.
Jin-Hong YuanCollege of Life Sciences, Henan Normal University, Xinxiang, 453007, China.
Chuan-Liang DengCollege of Life Sciences, Henan Normal University, Xinxiang, 453007, China.
Zan-Min HuInstitute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, 100101, China.
Wu-Jun GaoCollege of Life Sciences, Henan Normal University, Xinxiang, 453007, China. gaowujun1@163.com.
Henan Normal University · CNChinese Academy of Sciences · CNXinxiang Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

∆(8)-sphingolipid desaturase catalyzes the C8 desaturation of a long chain base, which is the characteristic structure of various complex sphingolipids. The genes of 20 ∆(8)-sphingolipid desaturases from 12 plants were identified and functionally detected by using Saccharomyces cerevisiae system to elucidate the relationship between the biochemical function and evolution of this enzyme. Results showed that the 20 genes all can encode a functional ∆(8)-sphingolipid desaturase, which catalyzes different ratios of two products, namely, 8(Z) and 8(E)-C18-phytosphingenine. The coded enzymes could be divided into two groups on the basis of biochemical functions: ∆(8)-sphingolipid desaturase with a preference for an E-isomer product and ∆(8)-sphingolipid desaturase with a preference for a Z-isomer product. The conversion rate of the latter was generally lower than that of the former. Phylogenetic analysis revealed that the 20 desaturases could also be clustered into two groups, and this grouping is consistent with that of the biochemical functions. Thus, the biochemical function of ∆(8)-sphingolipid desaturase is correlated with its evolution. The two groups of ∆(8)-sphingolipid desaturases could arise from distinct ancestors in higher plants. However, they might have initially evolved from ∆(8)-sphingolipid desaturases in lower organisms, such as yeasts, which can produce E-isomer products only. Furthermore, almost all of the transgenic yeasts harboring ∆(8)-sphingolipid desaturase genes exhibit an improvement in aluminum tolerance. Our study provided new insights into the biochemical function and evolution of ∆(8)-sphingolipid desaturases in plants.

Indexed as

Evolution, MolecularGenes, PlantAluminumChromatography, High Pressure LiquidCloning, MolecularOxidoreductasesPhylogenyPlantsSaccharomyces cerevisiaeTransformation, GeneticAluminumOxidoreductasessphingolipid desaturaseAluminum toleranceBiochemical functionEvolutionΔ8-sphingolipid desaturase

Identifiers

PMID27294968
OpenAlexW2428209608

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.