Evidence map›Paper›PMID 27292797›Full record

ArticleMolecular cell2016

Cutoff Suppresses RNA Polymerase II Termination to Ensure Expression of piRNA Precursors.

Yung-Chia Ariel Chen, Evelyn Stuwe, Yicheng Luo, Maria Ninova, Adrien Le Thomas, Ekaterina Rozhavskaya, Sisi Li, Sivani Vempati, John D Laver, Dinshaw J Patel and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 92 papers.

0numbers the graph read from it
0cells of the map it votes in
92citing papers in PubMed
32.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

92 citing papers in PubMed, 162 citations in OpenAlex.

  1. Review
  2. Review
  3. In thebioRxiv : the preprint server for biology · 2026
    Article
  4. piRNA direct the chromatin reader to its genomic targets.bioRxiv : the preprint server for biology · 2026
    Article
  5. AbioRxiv : the preprint server for biology · 2026
    Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Probing direct interactions between nuclear proteins in cells with nxReLo.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  11. Article
  12. Article
  13. H3K27me3 expands the epigenetic control of piRNA transcription.Nature structural & molecular biology · 2025
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Review
  20. Review

32 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 3 countries.

Yung-Chia Ariel Chen *California Institute of Technology, Division of Biology, 147-75, 1200 E. California Blvd., Pasadena, CA 91125, USA.
Evelyn Stuwe *California Institute of Technology, Division of Biology, 147-75, 1200 E. California Blvd., Pasadena, CA 91125, USA.
Yicheng Luo *California Institute of Technology, Division of Biology, 147-75, 1200 E. California Blvd., Pasadena, CA 91125, USA.
Maria Ninova *California Institute of Technology, Division of Biology, 147-75, 1200 E. California Blvd., Pasadena, CA 91125, USA.
Adrien Le ThomasCalifornia Institute of Technology, Division of Biology, 147-75, 1200 E. California Blvd., Pasadena, CA 91125, USA.
Ekaterina RozhavskayaCalifornia Institute of Technology, Division of Biology, 147-75, 1200 E. California Blvd., Pasadena, CA 91125, USA.
Sisi LiMemorial Sloan-Kettering Cancer Center, Structural Biology Program, 1275 York Avenue, New York, NY, 10021 USA.
Sivani VempatiCalifornia Institute of Technology, Division of Biology, 147-75, 1200 E. California Blvd., Pasadena, CA 91125, USA.
John D LaverDepartment of Molecular Genetics, University of Toronto, 1 King's College Circle, Toronto, Ontario, Canada M5S 1A8.
Dinshaw J PatelMemorial Sloan-Kettering Cancer Center, Structural Biology Program, 1275 York Avenue, New York, NY, 10021 USA.
Craig A SmibertDepartment of Molecular Genetics, University of Toronto, 1 King's College Circle, Toronto, Ontario, Canada M5S 1A8.
Howard D LipshitzDepartment of Molecular Genetics, University of Toronto, 1 King's College Circle, Toronto, Ontario, Canada M5S 1A8.
Katalin Fejes TothCalifornia Institute of Technology, Division of Biology, 147-75, 1200 E. California Blvd., Pasadena, CA 91125, USA.
Alexei A AravinCalifornia Institute of Technology, Division of Biology, 147-75, 1200 E. California Blvd., Pasadena, CA 91125, USA.
California Institute of Technology · USUniversity of Toronto · CAMemorial Sloan Kettering Cancer Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Molecular Mechanism of the piRNA BiogenesisR01GM097363 · NIGMS · CORNELL UNIVERSITY · PI ARAVIN, ALEXEI A. · 2011 to 2025
$4.0M
Understanding the mechanism of Piwi-induced transcriptional silencingR01GM110217 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI FEJES TOTH, KATALIN · 2014 to 2024
$3.1M
Taming of Small RNA-based Epigenetic MechanismsDP2OD007371 · OD · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI ARAVIN, ALEXEI A. · 2010 to 2010
$2.4M
CIHR MOP-14409NCI NIH HHS P30 CA008748NIGMS NIH HHS R01 GM097363NIGMS NIH HHS R01 GM110217NIH HHS DP2 OD007371
6 · The paper itself

Abstract

Small non-coding RNAs called piRNAs serve as guides for an adaptable immune system that represses transposable elements in germ cells of Metazoa. In Drosophila the RDC complex, composed of Rhino, Deadlock and Cutoff (Cuff) bind chromatin of dual-strand piRNA clusters, special genomic regions, which encode piRNA precursors. The RDC complex is required for transcription of piRNA precursors, though the mechanism by which it licenses transcription remained unknown. Here, we show that Cuff prevents premature termination of RNA polymerase II. Cuff prevents cleavage of nascent RNA at poly(A) sites by interfering with recruitment of the cleavage and polyadenylation specificity factor (CPSF) complex. Cuff also protects processed transcripts from degradation by the exonuclease Rat1. Our work reveals a conceptually different mechanism of transcriptional enhancement. In contrast to other factors that regulate termination by binding to specific signals on nascent RNA, the RDC complex inhibits termination in a chromatin-dependent and sequence-independent manner.

Indexed as

Transcription, GeneticAdenosineAnimalsAnimals, Genetically ModifiedBinding SitesChromatinChromosomal Proteins, Non-HistoneCleavage And Polyadenylation Specificity FactorComputational BiologyDatabases, GeneticDrosophila melanogasterDrosophila ProteinsExoribonucleasesGenes, ReporterMicrotubule-Associated ProteinsMultiprotein ComplexesAdenosineChromatinChromosomal Proteins, Non-HistoneCleavage And Polyadenylation Specificity FactorCuff protein, Drosophiladel protein, DrosophilaDrosophila ProteinsExoribonucleasesMicrotubule-Associated ProteinsMultiprotein ComplexespolyadenosinePolymersrhi protein, DrosophilaRNA-Binding ProteinsRNA Polymerase IIRNA, Small Interfering

Identifiers

PMID27292797
PMCPMC4980073
OpenAlexW2411724331

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.