Evidence map›Paper›PMID 27292080›Full record

ArticleVirus research2016

Phylogenetic and antigenic characterization of newly isolated porcine epidemic diarrhea viruses in Japan.

Md Taimur Islam, Tomoe Kubota, Makoto Ujike, Yoshiriro Yahara, Fumihiro Taguchi

Abstract read
In one paragraph

Article in Virus research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Md Taimur IslamLaboratory of Virology and Viral Infections, Faculty of Veterinary Medicine, Nippon Veterinary and Life Science University, 1-7-1 Kyonancho, Musashino-shi, Tokyo 180-8602, Japan.
Tomoe KubotaR & D Institute of Feed and Livestock, Marubeni Nisshin Feed Co., LTD., 1242-5 Iguchi, Nasushiobara, Tochigi 329-2763, Japan.
Makoto UjikeLaboratory of Virology and Viral Infections, Faculty of Veterinary Medicine, Nippon Veterinary and Life Science University, 1-7-1 Kyonancho, Musashino-shi, Tokyo 180-8602, Japan.
Yoshiriro YaharaR & D Institute of Feed and Livestock, Marubeni Nisshin Feed Co., LTD., 1242-5 Iguchi, Nasushiobara, Tochigi 329-2763, Japan.
Fumihiro TaguchiLaboratory of Virology and Viral Infections, Faculty of Veterinary Medicine, Nippon Veterinary and Life Science University, 1-7-1 Kyonancho, Musashino-shi, Tokyo 180-8602, Japan. Electronic address: ftaguchi@nvlu.ac.jp.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To evaluate the mechanism by which a large outbreak of porcine epidemic diarrhea (PED) occurred in Japan, where the majority of sows are vaccinated, we isolated two new strains of PED virus (PEDV) from the intestines of piglets and found that they showed greater similarity to US isolates (group II PEDV) than to the Japanese vaccine strain (group I PEDV). We compared the antigenicity of the vaccine type strain and newly isolated strains by means of a neutralization test using sera from a number of pigs from various farms; the results revealed that they are antigenically similar. This is the first report of the similarity of group I and II viruses using sera from individual pigs vaccinated with group I virus. These data suggest that the large outbreak of PED in Japan cannot be attributed to inefficient vaccination but may be due to the extremely high virulence of the newly appearing viruses.

Indexed as

Amino Acid SequenceAnimalsAntibodies, NeutralizingAntibodies, ViralAntigens, ViralCoronavirus InfectionsJapanNeutralization TestsPhylogenyPorcine epidemic diarrhea virusSpike Glycoprotein, CoronavirusSwineSwine DiseasesAntibodies, NeutralizingAntibodies, ViralAntigens, ViralSpike Glycoprotein, CoronavirusNeutralization testPhylogenetic analysisPorcine epidemic diarrhea virus (PEDV)

Identifiers

PMID27292080
PMCPMC7172460

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.