Evidence map›Paper›PMID 27292025›Full record

ArticleNeoplasia (New York, N.Y.)2016

The Landscape of microRNA Targeting in Prostate Cancer Defined by AGO-PAR-CLIP.

Mark P Hamilton, Kimal I Rajapakshe, David A Bader, Jasmina Z Cerne, Eric A Smith, Cristian Coarfa, Sean M Hartig, Sean E McGuire

Open access · goldAbstract read
In one paragraph

Article in Neoplasia (New York, N.Y.), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed, 1 pooled it
2.2field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 1 synthesis or guideline pooled it, 73 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Mark P HamiltonDepartment of Molecular and Cell Biology, Baylor College of Medicine Hospital, Houston, TX, USA.
Kimal I RajapaksheDepartment of Molecular and Cell Biology, Baylor College of Medicine Hospital, Houston, TX, USA; Dan L. Duncan Cancer Center, Baylor College of Medicine, Houston, TX, USA.
David A BaderDepartment of Molecular and Cell Biology, Baylor College of Medicine Hospital, Houston, TX, USA.
Jasmina Z CerneDepartment of Molecular and Cell Biology, Baylor College of Medicine Hospital, Houston, TX, USA.
Eric A SmithDepartment of Molecular and Cell Biology, Baylor College of Medicine Hospital, Houston, TX, USA.
Cristian CoarfaDepartment of Molecular and Cell Biology, Baylor College of Medicine Hospital, Houston, TX, USA; Dan L. Duncan Cancer Center, Baylor College of Medicine, Houston, TX, USA.
Sean M HartigDepartment of Molecular and Cell Biology, Baylor College of Medicine Hospital, Houston, TX, USA.
Sean E McGuireDepartment of Molecular and Cell Biology, Baylor College of Medicine Hospital, Houston, TX, USA; Dan L. Duncan Cancer Center, Baylor College of Medicine, Houston, TX, USA; Department of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA. Electronic address: sean.mcguire@bcm.edu.
Baylor College of Medicine · USThe University of Texas MD Anderson Cancer Center · US

Funding

Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI DAVID R ROWLEY · 2007 to 2026
$73.9M
A novel axis regulates adipocyte plasticityK01DK096093 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI HARTIG, SEAN · 2013 to 2015
$444k
Functional Investigation of the Mitochondrial Pyruvate Carrier in Prostate CancerF30CA196108 · NCI · BAYLOR COLLEGE OF MEDICINE · PI BADER, DAVID ALAN · 2015 to 2017
$123k
NCI NIH HHS F30 CA196108NCI NIH HHS P30 CA125123NIDDK NIH HHS K01 DK096093
6 · The paper itself

Abstract

MicroRNA (miRNA) deregulation in prostate cancer (PCa) contributes to PCa initiation and metastatic progression. To comprehensively define the cancer-associated changes in miRNA targeting and function in commonly studied models of PCa, we performed photoactivatable ribonucleoside-enhanced cross-linking immunoprecipitation of the Argonaute protein in a panel of PCa cell lines modeling different stages of PCa progression. Using this comprehensive catalogue of miRNA targets, we analyzed miRNA targeting on known drivers of PCa and examined tissue-specific and stage-specific pathway targeting by miRNAs. We found that androgen receptor is the most frequently targeted PCa oncogene and that miR-148a targets the largest number of known PCa drivers. Globally, tissue-specific and stage-specific changes in miRNA targeting are driven by homeostatic response to active oncogenic pathways. Our findings indicate that, even in advanced PCa, the miRNA pool adapts to regulate continuing alterations in the cancer genome to balance oncogenic molecular changes. These findings are important because they are the first to globally characterize miRNA changes in PCa and demonstrate how the miRNA target spectrum responds to staged tumorigenesis.

Indexed as

Argonaute ProteinsBasic Helix-Loop-Helix ProteinsCell Line, TumorCell MovementCell ProliferationCell Transformation, NeoplasticChromosomal Proteins, Non-HistoneCyclin-Dependent Kinase Inhibitor p27HumansMaleMicrofilament ProteinsMicroRNAsNeoplasm InvasivenessProstatic NeoplasmsReceptors, AndrogenRNA InterferenceArgonaute ProteinsBasic Helix-Loop-Helix ProteinsCDKN1B protein, humancentromere protein FChromosomal Proteins, Non-HistoneCyclin-Dependent Kinase Inhibitor p27Microfilament ProteinsMicroRNAsMIRN148 microRNA, humanReceptors, AndrogenRNA, Small Interfering

Identifiers

PMID27292025
PMCPMC4909715
OpenAlexW2409516780

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.