Evidence map›Paper›PMID 27291402›Full record

ArticleCell chemical biology2016

Chemoproteomic Strategy to Quantitatively Monitor Transnitrosation Uncovers Functionally Relevant S-Nitrosation Sites on Cathepsin D and HADH2.

Yani Zhou, Sarah L Wynia-Smith, Shalise M Couvertier, Kelsey S Kalous, Michael A Marletta, Brian C Smith, Eranthie Weerapana

Open access · bronzeAbstract read
In one paragraph

Article in Cell chemical biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
4.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 44 citations in OpenAlex.

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  11. Chemical Probes for Redox Signaling and Oxidative Stress.Antioxidants & redox signaling · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Yani ZhouDepartment of Chemistry, Boston College, Chestnut Hill, MA 02467, USA.
Sarah L Wynia-SmithDepartment of Chemistry, The Scripps Research Institute, La Jolla, CA 92037, USA; Department of Biochemistry, Medical College of Wisconsin, Milwaukee, WI 53226, USA.
Shalise M CouvertierDepartment of Chemistry, Boston College, Chestnut Hill, MA 02467, USA.
Kelsey S KalousDepartment of Biochemistry, Medical College of Wisconsin, Milwaukee, WI 53226, USA.
Michael A MarlettaDepartment of Chemistry, The Scripps Research Institute, La Jolla, CA 92037, USA; Departments of Chemistry and Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA. Electronic address: marletta@berkeley.edu.
Brian C SmithDepartment of Chemistry, The Scripps Research Institute, La Jolla, CA 92037, USA; Department of Biochemistry, Medical College of Wisconsin, Milwaukee, WI 53226, USA. Electronic address: brismith@mcw.edu.
Eranthie WeerapanaDepartment of Chemistry, Boston College, Chestnut Hill, MA 02467, USA. Electronic address: eranthie@bc.edu.
Boston College · USMedical College of Wisconsin · USScripps Research Institute · USUniversity of California, Berkeley · US

Funding

Investigating cysteine-mediated protein activities in C. elegansR01GM118431 · NIGMS · BOSTON COLLEGE · PI WEERAPANA, ERANTHIE · 2015 to 2019
$1.8M
Specificity and Control of Signaling by S-NitrosationR01GM080272 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI MARLETTA, MICHAEL A. · 2007 to 2010
$1.1M
Shining Light on the Mechanism and Regulation of Nitric Oxide SynthasesF32GM095023 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI SMITH, BRIAN CHRISTOPHER · 2010 to 2012
$115k
American Heart Association-American Stroke Association 15SDG25830057NIGMS NIH HHS F32 GM095023NIGMS NIH HHS R01 GM080272NIGMS NIH HHS R01 GM118431
6 · The paper itself

Abstract

S-Nitrosoglutathione (GSNO) is an endogenous transnitrosation donor involved in S-nitrosation of a variety of cellular proteins, thereby regulating diverse protein functions. Quantitative proteomic methods are necessary to establish which cysteine residues are most sensitive to GSNO-mediated transnitrosation. Here, a competitive cysteine-reactivity profiling strategy was implemented to quantitatively measure the sensitivity of >600 cysteine residues to transnitrosation by GSNO. This platform identified a subset of cysteine residues with a high propensity for GSNO-mediated transnitrosation. Functional characterization of previously unannotated S-nitrosation sites revealed that S-nitrosation of a cysteine residue distal to the 3-hydroxyacyl-CoA dehydrogenase type 2 (HADH2) active site impaired catalytic activity. Similarly, S-nitrosation of a non-catalytic cysteine residue in the lysosomal aspartyl protease cathepsin D (CTSD) inhibited proteolytic activation. Together, these studies revealed two previously uncharacterized cysteine residues that regulate protein function, and established a chemical-proteomic platform with capabilities to determine substrate specificity of other cellular transnitrosation agents.

Indexed as

Proteomics3-Hydroxyacyl CoA DehydrogenasesCathepsin DHumansMCF-7 CellsNitrosation3-Hydroxyacyl CoA DehydrogenasesCathepsin DCTSD protein, humanHSD17B10 protein, human

Identifiers

PMID27291402
PMCPMC4920707
OpenAlexW2412282049

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.