Evidence map›Paper›PMID 27291296›Full record

ArticleScientific reports2016

Comparative chemical genomics reveal that the spiroindolone antimalarial KAE609 (Cipargamin) is a P-type ATPase inhibitor.

Gregory M Goldgof, Jacob D Durrant, Sabine Ottilie, Edgar Vigil, Kenneth E Allen, Felicia Gunawan, Maxim Kostylev, Kiersten A Henderson, Jennifer Yang, Jake Schenken and 11 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
3.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 54 citations in OpenAlex.

  1. Trial
  2. Review
  3. Ciliary-Mediated Mechanotransduction in Skeletal Development and Diseases.Results and problems in cell differentiation · 2026
    Review
  4. Malaria: past, present, and future.Signal transduction and targeted therapy · 2025
    Review
  5. The possibilities and challenges associated with selective targetingTransactions of the Royal Society of South Africa. Royal Society of South Africa · 2025
    Article
  6. Fungal Plasma Membrane HJournal of fungi (Basel, Switzerland) · 2024
    Review
  7. Article
  8. Comparative chemical genomics inProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  9. AssessmentAntimicrobial agents and chemotherapy · 2022
    Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Review
  17. ANS Interacts with the CaJournal of fluorescence · 2020
    Article
  18. Article
  19. Article
  20. Characterization of the ATP4 ion pump inThe Journal of biological chemistry · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 5 institutions in 1 country.

Gregory M GoldgofDivision of Pharmacology and Drug Discovery, Department of Pediatrics, University of California, San Diego, School of Medicine, La Jolla, California, USA.
Jacob D DurrantDepartment of Chemistry &Biochemistry and the National Biomedical Computation Resource, University of California, San Diego, La Jolla, California, USA.
Sabine OttilieDivision of Pharmacology and Drug Discovery, Department of Pediatrics, University of California, San Diego, School of Medicine, La Jolla, California, USA.
Edgar VigilDivision of Pharmacology and Drug Discovery, Department of Pediatrics, University of California, San Diego, School of Medicine, La Jolla, California, USA.
Kenneth E AllenDepartment of Genetics, Yale University School of Medicine, New Haven, Connecticut, USA.
Felicia GunawanDivision of Pharmacology and Drug Discovery, Department of Pediatrics, University of California, San Diego, School of Medicine, La Jolla, California, USA.
Maxim KostylevDepartment of Synthetic Biology and Bioenergy, J. Craig Venter Institute, La Jolla, California, USA.
Kiersten A HendersonBasic Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Jennifer YangDivision of Pharmacology and Drug Discovery, Department of Pediatrics, University of California, San Diego, School of Medicine, La Jolla, California, USA.
Jake SchenkenDivision of Pharmacology and Drug Discovery, Department of Pediatrics, University of California, San Diego, School of Medicine, La Jolla, California, USA.
Gregory M LaMonteDivision of Pharmacology and Drug Discovery, Department of Pediatrics, University of California, San Diego, School of Medicine, La Jolla, California, USA.
Micah J ManaryDivision of Pharmacology and Drug Discovery, Department of Pediatrics, University of California, San Diego, School of Medicine, La Jolla, California, USA.
Ayako MuraoDepartment of Synthetic Biology and Bioenergy, J. Craig Venter Institute, La Jolla, California, USA.
Marie NachonDivision of Pharmacology and Drug Discovery, Department of Pediatrics, University of California, San Diego, School of Medicine, La Jolla, California, USA.
Rebecca MurrayDivision of Pharmacology and Drug Discovery, Department of Pediatrics, University of California, San Diego, School of Medicine, La Jolla, California, USA.
Maximo PrescottDivision of Pharmacology and Drug Discovery, Department of Pediatrics, University of California, San Diego, School of Medicine, La Jolla, California, USA.
Case W McNamaraGenomics Institute of the Novartis Research Foundation, San Diego, California, USA.
Carolyn W SlaymanDepartment of Genetics, Yale University School of Medicine, New Haven, Connecticut, USA.
Rommie E AmaroDepartment of Chemistry &Biochemistry and the National Biomedical Computation Resource, University of California, San Diego, La Jolla, California, USA.
Yo SuzukiDepartment of Synthetic Biology and Bioenergy, J. Craig Venter Institute, La Jolla, California, USA.
Elizabeth A WinzelerDivision of Pharmacology and Drug Discovery, Department of Pediatrics, University of California, San Diego, School of Medicine, La Jolla, California, USA.
University of California, San Diego · USJ. Craig Venter Institute · USYale University · USFred Hutch Cancer Center · USGenomics Institute of the Novartis Research Foundation · US

Funding

VIRAL MALIGNANCYP30CA023100 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Jesse Nodora · 1985 to 2026
$124.9M
Transgenic & Knock-out MouseP30DK063491 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Andrea L Hevener · 2003 to 2026
$40.4M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007198 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHI, NEIL C, INSEL, PAUL A · 1985 to 2024
$29.3M
San Diego Clinical and Translational Research InstituteUL1TR000100 · NCATS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI FIRESTEIN, GARY S · 2012 to 2015
$19.7M
National Biomedical Computation Resource - Competitive Revision SupplementP41GM103426 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI AMARO, ROMMIE E · 2012 to 2019
$14.0M
Discovery of chemically validated malaria liver stage targetsR01AI090141 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WINZELER, ELIZABETH A · 2011 to 2019
$3.4M
A Structural Systems Biology Approach to Drug DiscoveryDP2OD007237 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI AMARO, ROMMIE E · 2010 to 2015
$2.9M
Defining the targets of broad intervention antimalarial agentsR01AI103058 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WINZELER, ELIZABETH A · 2013 to 2016
$2.6M
NCATS NIH HHS UL1 TR000100NCI NIH HHS P30 CA023100NIAID NIH HHS R01 AI090141NIAID NIH HHS R01 AI103058NIDDK NIH HHS P30 DK063491NIGMS NIH HHS P41 GM103426NIGMS NIH HHS T32 GM007198NIH HHS DP2 OD007237
6 · The paper itself

Abstract

The spiroindolones, a new class of antimalarial medicines discovered in a cellular screen, are rendered less active by mutations in a parasite P-type ATPase, PfATP4. We show here that S. cerevisiae also acquires mutations in a gene encoding a P-type ATPase (ScPMA1) after exposure to spiroindolones and that these mutations are sufficient for resistance. KAE609 resistance mutations in ScPMA1 do not confer resistance to unrelated antimicrobials, but do confer cross sensitivity to the alkyl-lysophospholipid edelfosine, which is known to displace ScPma1p from the plasma membrane. Using an in vitro cell-free assay, we demonstrate that KAE609 directly inhibits ScPma1p ATPase activity. KAE609 also increases cytoplasmic hydrogen ion concentrations in yeast cells. Computer docking into a ScPma1p homology model identifies a binding mode that supports genetic resistance determinants and in vitro experimental structure-activity relationships in both P. falciparum and S. cerevisiae. This model also suggests a shared binding site with the dihydroisoquinolones antimalarials. Our data support a model in which KAE609 exerts its antimalarial activity by directly interfering with P-type ATPase activity.

Indexed as

Amino Acid SequenceAntimalarialsBinding SitesCRISPR-Cas SystemsCytosolDrug Resistance, FungalIndolesInhibitory Concentration 50Molecular Docking SimulationPlasmodium falciparumProtein Structure, TertiaryProton-Translocating ATPasesProtozoan ProteinsP-type ATPasesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAntimalarialsIndolesNITD 609PMA1 protein, S cerevisiaeProton-Translocating ATPasesProtozoan ProteinsP-type ATPasesSaccharomyces cerevisiae ProteinsSpiro Compounds

Identifiers

PMID27291296
PMCPMC4904242
OpenAlexW2423805083

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.