Evidence map›Paper›PMID 27289102›Full record

ArticleGenome biology and evolution2016

Multigenomic Delineation of Plasmodium Species of the Laverania Subgenus Infecting Wild-Living Chimpanzees and Gorillas.

Weimin Liu, Sesh A Sundararaman, Dorothy E Loy, Gerald H Learn, Yingying Li, Lindsey J Plenderleith, Jean-Bosco N Ndjango, Sheri Speede, Rebeca Atencia, Debby Cox and 6 more

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
6.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Role ofProceedings of the National Academy of Sciences of the United States of America · 2023
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  5. Host genetic backgrounds: the key to determining parasite-host adaptation.Frontiers in cellular and infection microbiology · 2023
    Review
  6. Article
  7. Article
  8. PMRT1, amBio · 2022
    Article
  9. Article
  10. Mid-Liver Stage Arrest ofFrontiers in cellular and infection microbiology · 2022
    Article
  11. Review
  12. Review
  13. Ape Origins of Human Malaria.Annual review of microbiology · 2020
    Review
  14. Article
  15. Article
  16. Article
  17. Clinical microbiology reviews · 2019
    Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 7 institutions in 4 countries.

Weimin LiuDepartment of Medicine, Perelman School of Medicine, University of Pennsylvania.
Sesh A SundararamanDepartment of Medicine, Perelman School of Medicine, University of Pennsylvania Department of Microbiology, Perelman School of Medicine, University of Pennsylvania.
Dorothy E LoyDepartment of Medicine, Perelman School of Medicine, University of Pennsylvania Department of Microbiology, Perelman School of Medicine, University of Pennsylvania.
Gerald H LearnDepartment of Medicine, Perelman School of Medicine, University of Pennsylvania.
Yingying LiDepartment of Medicine, Perelman School of Medicine, University of Pennsylvania.
Lindsey J PlenderleithInstitute of Evolutionary Biology, and Centre for Immunity, Infection and Evolution, University of Edinburgh, United Kingdom.
Jean-Bosco N NdjangoFaculty of Sciences, University of Kisangani, Democratic Republic of the Congo.
Sheri SpeedeSanaga-Yong Chimpanzee Rescue Center, IDA-Africa, Portland, Oregon.
Rebeca AtenciaTchimpounga Chimpanzee Rehabilitation Center, Pointe-Noire, Republic of the Congo.
Debby CoxTchimpounga Chimpanzee Rehabilitation Center, Pointe-Noire, Republic of the Congo Africa Programmes, Jane Goodall Institute, Vienna, Virginia.
George M ShawDepartment of Medicine, Perelman School of Medicine, University of Pennsylvania Department of Microbiology, Perelman School of Medicine, University of Pennsylvania.
Ahidjo AyoubaUMI 233, Institut de Recherche pour le Développement (IRD), INSERM U1175, and University of Montpellier, France.
Martine PeetersUMI 233, Institut de Recherche pour le Développement (IRD), INSERM U1175, and University of Montpellier, France.
Julian C RaynerMalaria Programme, Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Beatrice H HahnDepartment of Medicine, Perelman School of Medicine, University of Pennsylvania Department of Microbiology, Perelman School of Medicine, University of Pennsylvania.
Paul M SharpInstitute of Evolutionary Biology, and Centre for Immunity, Infection and Evolution, University of Edinburgh, United Kingdom paul.sharp@ed.ac.uk.
University of Pennsylvania · USInstitut de Recherche pour le Développement · FRCentre for Immunity, Infection and Evolution · GBThe Jane Goodall Institute · USUniversité de Kisangani · CDUniversity of Edinburgh · GBWellcome Sanger Institute · GB

Funding

Virus & Reservoirs CoreP30AI045008 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI ROBERT GROSS · 1999 to 2026
$78.6M
Molecular Epidemiology and Natural History of SIVcpzR01AI058715 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HAHN, BEATRICE H · 2004 to 2013
$6.1M
Natural SIV Reservoirs and Human Zoonotic RiskR37AI050529 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HAHN, BEATRICE H · 2008 to 2017
$5.7M
Great Ape Reservoirs of Human MalariaR01AI091595 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HAHN, BEATRICE H · 2011 to 2019
$5.3M
PARASITOLOGY: MODERN APPROACHEST32AI007532 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HERBERT, DE'BROSKI R · 1998 to 2022
$5.0M
Studies of the precursor of the human AIDS virus in its natural chimpanzee hostR01AI120810 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI HAHN, BEATRICE H · 2016 to 2020
$3.4M
NIAID NIH HHS P30 AI045008NIAID NIH HHS R01 AI058715NIAID NIH HHS R01 AI091595NIAID NIH HHS R01 AI120810NIAID NIH HHS R37 AI050529NIAID NIH HHS T32 AI007532Wellcome Trust
6 · The paper itself

Abstract

Plasmodium falciparum, the major cause of malaria morbidity and mortality worldwide, is only distantly related to other human malaria parasites and has thus been placed in a separate subgenus, termed Laverania Parasites morphologically similar to P. falciparum have been identified in African apes, but only one other Laverania species, Plasmodium reichenowi from chimpanzees, has been formally described. Although recent studies have pointed to the existence of additional Laverania species, their precise number and host associations remain uncertain, primarily because of limited sampling and a paucity of parasite sequences other than from mitochondrial DNA. To address this, we used limiting dilution polymerase chain reaction to amplify additional parasite sequences from a large number of chimpanzee and gorilla blood and fecal samples collected at two sanctuaries and 30 field sites across equatorial Africa. Phylogenetic analyses of more than 2,000 new sequences derived from the mitochondrial, nuclear, and apicoplast genomes revealed six divergent and well-supported clades within the Laverania parasite group. Although two of these clades exhibited deep subdivisions in phylogenies estimated from organelle gene sequences, these sublineages were geographically defined and not present in trees from four unlinked nuclear loci. This greatly expanded sequence data set thus confirms six, and not seven or more, ape Laverania species, of which P. reichenowi, Plasmodium gaboni, and Plasmodium billcollinsi only infect chimpanzees, whereas Plasmodium praefalciparum, Plasmodium adleri, and Pladmodium blacklocki only infect gorillas. The new sequence data also confirm the P. praefalciparum origin of human P. falciparum.

Indexed as

Evolution, MolecularPhylogenyAfricaAnimalsDNA, MitochondrialFecesGorilla gorillaHumansMalaria, FalciparumPan troglodytesPlasmodium falciparumSequence Analysis, DNADNA, Mitochondrialcryptic Plasmodium speciesLaveraniaP. falciparumPlasmodium parasites infecting chimpanzees and gorillassingle genome sequencing

Identifiers

PMID27289102
PMCPMC4943199
OpenAlexW2418674657

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.