Evidence map›Paper›PMID 27288441›Full record

ArticleNucleic acids research2016

Structural features of influenza A virus panhandle RNA enabling the activation of RIG-I independently of 5'-triphosphate.

Mi-Kyung Lee, Hee-Eun Kim, Eun-Byeol Park, Janghyun Lee, Ki-Hun Kim, Kyungeun Lim, Seoyun Yum, Young-Hoon Lee, Suk-Jo Kang, Joon-Hwa Lee and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 35 citations in OpenAlex.

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  11. Structure and Function of Influenza Polymerase.Cold Spring Harbor perspectives in medicine · 2021
    Review
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  18. RNA regulatory processes in RNA virus biology.Wiley interdisciplinary reviews. RNA · 2019
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Mi-Kyung LeeDepartment of Chemistry, KAIST, Daejeon 34141, Republic of Korea Disease Target Structure Research Center, KRIBB, Daejeon 34141, Republic of Korea.
Hee-Eun KimDepartment of Chemistry and Research Institute of Natural Science, Gyeongsang National University, Jinju, Gyeongnam 52828, Republic of Korea.
Eun-Byeol ParkDepartment of Biological Sciences, KAIST, Daejeon 34141, Republic of Korea.
Janghyun LeeDepartment of Chemistry, KAIST, Daejeon 34141, Republic of Korea.
Ki-Hun KimDepartment of Chemistry, KAIST, Daejeon 34141, Republic of Korea.
Kyungeun LimDepartment of Chemistry, KAIST, Daejeon 34141, Republic of Korea.
Seoyun YumDepartment of Biological Sciences, KAIST, Daejeon 34141, Republic of Korea.
Young-Hoon LeeDepartment of Chemistry, KAIST, Daejeon 34141, Republic of Korea.
Suk-Jo KangDepartment of Biological Sciences, KAIST, Daejeon 34141, Republic of Korea suk-jo.kang@kaist.ac.kr.
Joon-Hwa LeeDepartment of Chemistry and Research Institute of Natural Science, Gyeongsang National University, Jinju, Gyeongnam 52828, Republic of Korea joonhwa@gnu.ac.kr.
Byong-Seok ChoiDepartment of Chemistry, KAIST, Daejeon 34141, Republic of Korea byongseok.choi@kaist.ac.kr.
Korea Advanced Institute of Science and Technology · KRGyeongsang National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Retinoic acid-inducible gene I (RIG-I) recognizes specific molecular patterns of viral RNAs for inducing type I interferon. The C-terminal domain (CTD) of RIG-I binds to double-stranded RNA (dsRNA) with the 5'-triphosphate (5'-PPP), which induces a conformational change in RIG-I to an active form. It has been suggested that RIG-I detects infection of influenza A virus by recognizing the 5'-triphosphorylated panhandle structure of the viral RNA genome. Influenza panhandle RNA has a unique structure with a sharp helical bending. In spite of extensive studies of how viral RNAs activate RIG-I, whether the structural elements of the influenza panhandle RNA confer the ability to activate RIG-I signaling has been poorly explored. Here, we investigated the dynamics of the influenza panhandle RNA in complex with RIG-I CTD using NMR spectroscopy and showed that the bending structure of the panhandle RNA negates the requirement of a 5'-PPP moiety for RIG-I activation.

Indexed as

Nucleic Acid ConformationBase PairingCalorimetryDEAD Box Protein 58HumansHydrogenInfluenza A virusInterferon-betaMagnetic Resonance SpectroscopyModels, BiologicalPolyphosphatesProtein BindingProtein DomainsReal-Time Polymerase Chain ReactionReceptors, ImmunologicRNA StabilityDEAD Box Protein 58HydrogenInterferon-betaPolyphosphatesReceptors, ImmunologicRIGI protein, humanRNA, Viraltriphosphoric acid

Identifiers

PMID27288441
PMCPMC5041458
OpenAlexW2419024942

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.