Evidence map›Paper›PMID 27287806›Full record

ArticleDevelopment (Cambridge, England)2016

The FaceBase Consortium: a comprehensive resource for craniofacial researchers.

James F Brinkley, Shannon Fisher, Matthew P Harris, Greg Holmes, Joan E Hooper, Ethylin Wang Jabs, Kenneth L Jones, Carl Kesselman, Ophir D Klein, Richard L Maas and 9 more

Open access · hybridAbstract read
In one paragraph

Article in Development (Cambridge, England), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed, 1 pooled it
6.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 1 synthesis or guideline pooled it, 69 citations in OpenAlex.

  1. Pooled it
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  19. Cartilage Segmentation in High-Resolution 3D Micro-CT Images via Uncertainty-Guided Self-training with Very Sparse Annotation.Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention · 2020
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 11 institutions in 1 country.

James F BrinkleyStructural Informatics Group, Department of Biological Structure, University of Washington, Seattle, WA 98195, USA.
Shannon FisherDepartment of Pharmacology and Experimental Therapeutics, Boston University School of Medicine, Boston, MA 02118, USA.
Matthew P HarrisDepartment of Orthopedic Research, Boston Children's Hospital and Department of Genetics, Harvard Medical School, Boston, MA 02115, USA.
Greg HolmesDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Joan E HooperCell and Developmental Biology, School of Medicine, University of Colorado, Aurora, CO 80045, USA.
Ethylin Wang JabsDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Kenneth L JonesDepartment of Biochemistry and Molecular Genetics, School of Medicine, University of Colorado, Aurora, CO 80045, USA.
Carl KesselmanInformation Sciences Institute, Viterbi School of Engineering, University of Southern California, Marina del Rey, CA 90292, USA.
Ophir D KleinProgram in Craniofacial Biology, Departments of Orofacial Sciences and Pediatrics, Institute for Human Genetics, University of California San Francisco, San Francisco, CA 94143, USA.
Richard L MaasDivision of Genetics, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115, USA.
Mary L MarazitaCenter for Craniofacial and Dental Genetics, Department of Oral Biology, School of Dental Medicine, University of Pittsburgh, Pittsburgh, PA 15213, USA Department of Human Genetics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, PA 15213, USA.
Licia SelleriProgram in Craniofacial Biology, Departments of Orofacial Sciences and Pediatrics, Institute for Human Genetics, University of California San Francisco, San Francisco, CA 94143, USA.
Richard A SpritzHuman Medical Genetics and Genomics Program, School of Medicine, University of Colorado, Aurora, CO 80045, USA.
Harm van BakelDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Axel ViselLawrence Berkeley National Laboratory, Berkeley, CA 94720, USA U.S. Department of Energy Joint Genome Institute, Walnut Creek, CA 94598, USA School of Natural Sciences, University of California Merced, Merced, CA 95343, USA.
Trevor J WilliamsDepartment of Craniofacial Biology, School of Dental Medicine, University of Colorado, Aurora, CO 80045, USA.
Joanna WysockaDepartment of Chemical and Systems Biology and of Developmental Biology, School of Medicine, Stanford University, Stanford, CA 94305, USA.
FaceBase Consortium
Yang ChaiCenter for Craniofacial Molecular Biology, Herman Ostrow School of Dentistry, University of Southern California, Los Angeles, CA 90033, USA ychai@usc.edu.ORCID 0000-0002-8943-0861
University of Colorado Anschutz Medical Campus · USIcahn School of Medicine at Mount Sinai · USUniversity of California, San Francisco · USUniversity of Southern California · USBoston Children's Hospital · USBoston University · USBrigham and Women's Hospital · USLawrence Berkeley National Laboratory · USStanford University · USUniversity of Pittsburgh · USUniversity of Washington · US

Funding

Colorado Clinical and Translational Sciences InstituteUL1TR001082 · NCATS · UNIVERSITY OF COLORADO DENVER · PI SOKOL, RONALD J. · 2013 to 2017
$48.0M
FaceBase 2 Coordinating CenterU01DE024449 · NIDCR · UNIVERSITY OF SOUTHERN CALIFORNIA · PI KESSELMAN, CARL · 2014 to 2018
$10.2M
Transcriptome Atlases of the Craniofacial SuturesU01DE024448 · NIDCR · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI HOLMES, GREG PETER, JABS, ETHYLIN WANG · 2014 to 2018
$3.7M
Genomic, Transgenic and Knockout Resources for Craniofacial Enhancer StudiesU01DE024427 · NIDCR · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI VISEL, AXEL · 2014 to 2018
$3.7M
Anatomical atlas and transgenic toolkit for late skull formation in zebrafishU01DE024434 · NIDCR · UNIVERSITY OF PENNSYLVANIA · PI FISHER, SHANNON, HARRIS, MATTHEW P · 2014 to 2018
$3.3M
Developing 3D Craniofacial Morphometry Data and Tools to Transform DysmorphologyU01DE024440 · NIDCR · UNIVERSITY OF COLORADO DENVER · PI HALLGRIMSSON, BENEDIKT, KLEIN, OPHIR D · 2014 to 2018
$3.3M
Epigenetic landscapes and regulatory divergence of human craniofacial traitsU01DE024430 · NIDCR · STANFORD UNIVERSITY · PI SELLERI, LICIA, WYSOCKA, JOANNA · 2014 to 2018
$3.1M
Rapid Identification and Validation of Human Craniofacial Development GenesU01DE024443 · NIDCR · BRIGHAM AND WOMEN'S HOSPITAL · PI MAAS, RICHARD L · 2014 to 2018
$2.9M
The Ontology of Craniofacial Development and MalformationU01DE024417 · NIDCR · UNIVERSITY OF WASHINGTON · PI BRINKLEY, JAMES F · 2014 to 2018
$2.0M
ADA3: a novel target for HPV16 E6 oncoproteinR01CA094143 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI BAND, VIMLA · 2002 to 2006
$1.7M
RNA dynamics in the developing mouse faceU01DE024429 · NIDCR · UNIVERSITY OF COLORADO DENVER · PI HOOPER, JOAN E, JONES, KENNETH LLOYD · 2014 to 2018
$1.7M
INTEGRATED RESEARCH OF FUNCTIONAL GENOMICS AND CRANIOFACIAL MORPHOGENESISU01DE024421 · NIDCR · UNIVERSITY OF SOUTHERN CALIFORNIA · PI CHAI, YANG · 2014 to 2018
$1.6M
NCATS NIH HHS UL1 TR001082NCI NIH HHS R01 CA094143NIDCR NIH HHS U01 DE024417NIDCR NIH HHS U01 DE024421NIDCR NIH HHS U01 DE024425NIDCR NIH HHS U01 DE024427NIDCR NIH HHS U01 DE024429NIDCR NIH HHS U01 DE024430NIDCR NIH HHS U01 DE024434NIDCR NIH HHS U01 DE024440NIDCR NIH HHS U01 DE024443NIDCR NIH HHS U01 DE024448NIDCR NIH HHS U01 DE024449
6 · The paper itself

Abstract

The FaceBase Consortium, funded by the National Institute of Dental and Craniofacial Research, National Institutes of Health, is designed to accelerate understanding of craniofacial developmental biology by generating comprehensive data resources to empower the research community, exploring high-throughput technology, fostering new scientific collaborations among researchers and human/computer interactions, facilitating hypothesis-driven research and translating science into improved health care to benefit patients. The resources generated by the FaceBase projects include a number of dynamic imaging modalities, genome-wide association studies, software tools for analyzing human facial abnormalities, detailed phenotyping, anatomical and molecular atlases, global and specific gene expression patterns, and transcriptional profiling over the course of embryonic and postnatal development in animal models and humans. The integrated data visualization tools, faceted search infrastructure, and curation provided by the FaceBase Hub offer flexible and intuitive ways to interact with these multidisciplinary data. In parallel, the datasets also offer unique opportunities for new collaborations and training for researchers coming into the field of craniofacial studies. Here, we highlight the focus of each spoke project and the integration of datasets contributed by the spokes to facilitate craniofacial research.

Indexed as

Databases, FactualResearch PersonnelAnimalsChromatin ImmunoprecipitationComputational BiologyFaceGenomicsHumansMiceModels, AnimalSkullZebrafishCraniofacial developmentData resourceFaceBase Consortium

Identifiers

PMID27287806
PMCPMC4958338
OpenAlexW2418111664

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.