Evidence map›Paper›PMID 27287804›Full record

ArticleDevelopment (Cambridge, England)2016

A distal 594 bp ECR specifies Hmx1 expression in pinna and lateral facial morphogenesis and is regulated by the Hox-Pbx-Meis complex.

Jessica M Rosin, Wenjie Li, Liza L Cox, Sara M Rolfe, Victor Latorre, Jennifer A Akiyama, Axel Visel, Takashi Kuramoto, Nicoletta Bobola, Eric E Turner and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Development (Cambridge, England), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. The spontaneous mouse mutant low set ears (Lse) is caused by tandem duplication of Fgf3 and Fgf4.Mammalian genome : official journal of the International Mammalian Genome Society · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 4 countries.

Jessica M RosinCenter for Developmental Biology & Regenerative Medicine, Seattle Children's Research Institute, Seattle, WA 98101, USA.
Wenjie LiCenter for Developmental Biology & Regenerative Medicine, Seattle Children's Research Institute, Seattle, WA 98101, USA Department of Oral Health Sciences, University of Washington, Seattle, WA 98195, USA.
Liza L CoxCenter for Developmental Biology & Regenerative Medicine, Seattle Children's Research Institute, Seattle, WA 98101, USA Department of Pediatrics (Craniofacial Medicine), University of Washington, Seattle, WA 98195, USA.ORCID 0000-0002-0703-7258
Sara M RolfeCenter for Developmental Biology & Regenerative Medicine, Seattle Children's Research Institute, Seattle, WA 98101, USA.
Victor LatorreSchool of Dentistry, Faculty of Medical and Human Sciences, University of Manchester, Manchester M13 9PT, UK.
Jennifer A AkiyamaFunctional Genomics Department, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.ORCID 0000-0002-0667-9355
Axel ViselFunctional Genomics Department, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA DOE Joint Genome Institute, Walnut Creek, CA 94598, USA School of Natural Sciences, University of California, Merced, CA 95343, USA.ORCID 0000-0002-4130-7784
Takashi KuramotoInstitute of Laboratory Animals, Graduate School of Medicine, Kyoto University, Kyoto 606-8501, Japan.
Nicoletta BobolaSchool of Dentistry, Faculty of Medical and Human Sciences, University of Manchester, Manchester M13 9PT, UK.ORCID 0000-0002-7103-4932
Eric E TurnerCenter for Integrative Brain Research, Seattle Children's Research Institute, Seattle, WA 98101, USA Department of Psychiatry and Behavioral Sciences, University of Washington, Seattle, WA 98195, USA.ORCID 0000-0001-5499-6788
Timothy C CoxCenter for Developmental Biology & Regenerative Medicine, Seattle Children's Research Institute, Seattle, WA 98101, USA Department of Oral Health Sciences, University of Washington, Seattle, WA 98195, USA Department of Pediatrics (Craniofacial Medicine), University of Washington, Seattle, WA 98195, USA Department of Anatomy and Developmental Biology, Monash University, Clayton, VIC 3800, Australia tccox@uw.edu.ORCID 0000-0001-8015-5528
Seattle Children's Hospital · USLawrence Berkeley National Laboratory · USUniversity of Manchester · GBKyoto University · JPUniversity of Washington · US

Funding

Generation of an In Vivo Human Genome Transcriptional Enhancer DatasetR01HG003988 · NHGRI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI Len Alexander Pennacchio · 2006 to 2026
$24.1M
Center for Mammalian Regulatory GenomicsU54HG006997 · NHGRI · LUDWIG INSTITUTE FOR CANCER RES LTD · PI REN, BING · 2012 to 2016
$14.3M
Genomic, Transgenic and Knockout Resources for Craniofacial Enhancer StudiesU01DE024427 · NIDCR · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI VISEL, AXEL · 2014 to 2018
$3.7M
TRANSCRIPTION FACTORS IN CONTROL OF BRAIN DEVELOPMENTR01HD033442 · NICHD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI TURNER, ERIC E. · 1997 to 2010
$2.5M
Comprehensive Training in Inter-Disciplinary Oral Health ResearchR90DE023059 · NIDCR · UNIVERSITY OF WASHINGTON · PI Robert Aaron Cornell · 2012 to 2026
$1.2M
Interaction of Genotype and Dietary Vitamin A in Cleft Lip and/or PalateF32DE025519 · NIDCR · SEATTLE CHILDREN'S HOSPITAL · PI ROLFE, SARA M · 2015 to 2018
$163k
Medical Research Council MR/L009986/1NHGRI NIH HHS R01 HG003988NHGRI NIH HHS U54 HG006997NICHD NIH HHS R01 HD033442NIDCR NIH HHS F32 DE025519NIDCR NIH HHS R90 DE023059NIDCR NIH HHS U01 DE024427
6 · The paper itself

Abstract

Hmx1 encodes a homeodomain transcription factor expressed in the developing lateral craniofacial mesenchyme, retina and sensory ganglia. Mutation or mis-regulation of Hmx1 underlies malformations of the eye and external ear in multiple species. Deletion or insertional duplication of an evolutionarily conserved region (ECR) downstream of Hmx1 has recently been described in rat and cow, respectively. Here, we demonstrate that the impact of Hmx1 loss is greater than previously appreciated, with a variety of lateral cranioskeletal defects, auriculofacial nerve deficits, and duplication of the caudal region of the external ear. Using a transgenic approach, we demonstrate that a 594 bp sequence encompassing the ECR recapitulates specific aspects of the endogenous Hmx1 lateral facial expression pattern. Moreover, we show that Hoxa2, Meis and Pbx proteins act cooperatively on the ECR, via a core 32 bp sequence, to regulate Hmx1 expression. These studies highlight the conserved role for Hmx1 in BA2-derived tissues and provide an entry point for improved understanding of the causes of the frequent lateral facial birth defects in humans.

Indexed as

Evolution, MolecularAnimalsBase PairingBase SequenceConserved SequenceCraniofacial AbnormalitiesEar AuricleEnhancer Elements, GeneticFaceGene Expression Regulation, DevelopmentalGenes, ReporterHomeodomain ProteinsMice, Mutant StrainsMice, TransgenicMorphogenesisOrgan SpecificityHomeodomain ProteinsHoxa2 protein, mouseMrg1 protein, mouseNKX5-3 protein, mousePbx1 protein, mousePre-B-Cell Leukemia Transcription Factor 1Transcription FactorsCraniofacial mesenchymeEnhancerEvolutionarily conserved region (ECR)Hmx1MousePinna

Identifiers

PMID27287804
PMCPMC4958336
OpenAlexW2418214937

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.