Evidence map›Paper›PMID 27287321›Full record

ArticleApplied and environmental microbiology2016

Relationship of Bacterial Richness to Organic Degradation Rate and Sediment Age in Subseafloor Sediment.

Emily A Walsh, John B Kirkpatrick, Robert Pockalny, Justine Sauvage, Arthur J Spivack, Richard W Murray, Mitchell L Sogin, Steven D'Hondt

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Microbial diversity in extreme environments.Nature reviews. Microbiology · 2022
    Review
  5. Article
  6. Article
  7. Article
  8. Global diversity of microbial communities in marine sediment.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  9. Transformation of organic matter in a Barents Sea sediment profile: coupled geochemical and microbiological processes.Philosophical transactions. Series A, Mathematical, physical, and engineering sciences · 2020
    Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Emily A WalshGraduate School of Oceanography, University of Rhode Island, Narragansett Bay Campus, Narragansett, Rhode Island, USA.
John B KirkpatrickGraduate School of Oceanography, University of Rhode Island, Narragansett Bay Campus, Narragansett, Rhode Island, USA.
Robert PockalnyGraduate School of Oceanography, University of Rhode Island, Narragansett Bay Campus, Narragansett, Rhode Island, USA.
Justine SauvageGraduate School of Oceanography, University of Rhode Island, Narragansett Bay Campus, Narragansett, Rhode Island, USA.
Arthur J SpivackGraduate School of Oceanography, University of Rhode Island, Narragansett Bay Campus, Narragansett, Rhode Island, USA.
Richard W MurrayDepartment of Earth and Environment, Boston University, Boston, Massachusetts, USA.
Mitchell L SoginJosephine Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, Woods Hole, Massachusetts, USA.
Steven D'HondtGraduate School of Oceanography, University of Rhode Island, Narragansett Bay Campus, Narragansett, Rhode Island, USA dhondt@uri.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

unlabelledSubseafloor sediment hosts a large, taxonomically rich, and metabolically diverse microbial ecosystem. However, the factors that control microbial diversity in subseafloor sediment have rarely been explored. Here, we show that bacterial richness varies with organic degradation rate and sediment age. At three open-ocean sites (in the Bering Sea and equatorial Pacific) and one continental margin site (Indian Ocean), richness decreases exponentially with increasing sediment depth. The rate of decrease in richness with increasing depth varies from site to site. The vertical succession of predominant terminal electron acceptors correlates with abundance-weighted community composition but does not drive the vertical decrease in richness. Vertical patterns of richness at the open-ocean sites closely match organic degradation rates; both properties are highest near the seafloor and decline together as sediment depth increases. This relationship suggests that (i) total catabolic activity and/or electron donor diversity exerts a primary influence on bacterial richness in marine sediment and (ii) many bacterial taxa that are poorly adapted for subseafloor sedimentary conditions are degraded in the geologically young sediment, where respiration rates are high. Richness consistently takes a few hundred thousand years to decline from near-seafloor values to much lower values in deep anoxic subseafloor sediment, regardless of sedimentation rate, predominant terminal electron acceptor, or oceanographic context. IMPORTANCE: Subseafloor sediment provides a wonderful opportunity to investigate the drivers of microbial diversity in communities that may have been isolated for millions of years. Our paper shows the impact of in situ conditions on bacterial community structure in subseafloor sediment. Specifically, it shows that bacterial richness in subseafloor sediment declines exponentially with sediment age, and in parallel with organic-fueled oxidation rate. This result suggests that subseafloor diversity ultimately depends on electron donor diversity and/or total community respiration. This work studied how and why biological richness changes over time in the extraordinary ecosystem of subseafloor sediment.

Indexed as

BacteriaGeologic SedimentsIndian OceanMicrobiotaOrganic ChemicalsPacific OceanRNA, BacterialRNA, Ribosomal, 16SSequence Analysis, DNAOrganic ChemicalsRNA, BacterialRNA, Ribosomal, 16S

Identifiers

PMID27287321
PMCPMC4968545

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.