Evidence map›Paper›PMID 27286451›Full record

ArticleOncotarget2016

Reduced genomic tumor heterogeneity after neoadjuvant chemotherapy is related to favorable outcome in patients with esophageal adenocarcinoma.

Askar Obulkasim, Bauke Ylstra, Hendrik F van Essen, Christian Benner, Sally Stenning, Ruth Langley, William Allum, David Cunningham, Imran Inam, Lindsay C Hewitt and 4 more

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 2 pooled it
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 2 syntheses or guidelines pooled it, 15 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 3 countries.

Askar ObulkasimDepartment of Epidemiology and Biostatistics, VU University Medical Center, Amsterdam, NL.
Bauke YlstraDepartment of Pathology, VU University Medical Center, Amsterdam, NL.
Hendrik F van EssenDepartment of Pathology, VU University Medical Center, Amsterdam, NL.
Christian BennerDepartment of Pathology, VU University Medical Center, Amsterdam, NL.
Sally StenningMRC Clinical Trials Unit at University College London, London, UK.
Ruth LangleyMRC Clinical Trials Unit at University College London, London, UK.
William AllumDepartment of Surgery, Royal Marsden NHS Foundation Trust, London, UK.
David CunninghamDepartment of Gastrointestinal Oncology, Royal Marsden NHS Foundation Trust, London and Surrey, UK.
Imran InamSection of Pathology and Tumour Biology, Leeds Institute of Cancer and Pathology, University of Leeds, Leeds, UK.
Lindsay C HewittSection of Pathology and Tumour Biology, Leeds Institute of Cancer and Pathology, University of Leeds, Leeds, UK.
Nicolas P WestSection of Pathology and Tumour Biology, Leeds Institute of Cancer and Pathology, University of Leeds, Leeds, UK.
Gerrit A MeijerDepartment of Pathology, VU University Medical Center, Amsterdam, NL.
Mark A van de WielDepartment of Epidemiology and Biostatistics, VU University Medical Center, Amsterdam, NL.
Heike I GrabschSection of Pathology and Tumour Biology, Leeds Institute of Cancer and Pathology, University of Leeds, Leeds, UK.
University Medical Center · USUniversity of Leeds · GBRoyal Marsden NHS Foundation Trust · GBUniversity College London · GBUniversity Hospital and Clinics · USAmsterdam UMC Location VUmc · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Neoadjuvant chemo(radio)therapy followed by surgery is the standard of care for patients with locally advanced resectable esophageal adenocarcinoma (EAC). There is increasing evidence that drug resistance might be related to genomic heterogeneity. We investigated whether genomic tumor heterogeneity is different after cytotoxic chemotherapy and is associated with EAC patient survival. We used arrayCGH and a quantitative assessment of the whole genome DNA copy number aberration patterns ('DNA copy number entropy') to establish the level of genomic tumor heterogeneity in 80 EAC treated with neoadjuvant chemotherapy followed by surgery (CS group) or surgery alone (S group). The association between DNA copy number entropy, clinicopathological variables and survival was investigated.DNA copy number entropy was reduced after chemotherapy, even if there was no morphological evidence of response to therapy (p<0.001). Low DNA copy number entropy was associated with improved survival in the CS group (p=0.011) but not in the S group (p=0.396).Our results suggest that cytotoxic chemotherapy reduces DNA copy number entropy, which might be a more sensitive tumor response marker than changes in the morphological tumor phenotype. The use of DNA copy number entropy in clinical practice will require validation of our results in a prospective study.

Indexed as

AdenocarcinomaAdultAgedAged, 80 and overAntineoplastic Combined Chemotherapy ProtocolsChemotherapy, AdjuvantDNA Copy Number VariationsEsophageal NeoplasmsFemaleGene Expression ProfilingGenetic HeterogeneityHumansMaleMiddle AgedNeoadjuvant TherapyPilot Projectsarray CGHchemotherapyesophageal adenocarcinomaprognosis

Identifiers

PMID27286451
PMCPMC5190081
OpenAlexW2413812548

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.