Evidence map›Paper›PMID 27285815›Full record

ArticleJournal of photochemistry and photobiology. B, Biology2016

Multiple active site residues are important for photochemical efficiency in the light-activated enzyme protochlorophyllide oxidoreductase (POR).

Binuraj R K Menon, Samantha J O Hardman, Nigel S Scrutton, Derren J Heyes

Open access · hybridAbstract read
In one paragraph

Article in Journal of photochemistry and photobiology. B, Biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 29 citations in OpenAlex.

  1. Review
  2. Article
  3. Expression ofPlants (Basel, Switzerland) · 2023
    Article
  4. Article
  5. Review
  6. Review
  7. Crystal structures of cyanobacterial light-dependent protochlorophyllide oxidoreductase.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Binuraj R K MenonCentre for Synthetic Biology of Fine and Speciality Chemicals, Manchester Institute of Biotechnology, School of Chemistry, The University of Manchester, Manchester, M1 7DN, UK.
Samantha J O HardmanCentre for Synthetic Biology of Fine and Speciality Chemicals, Manchester Institute of Biotechnology, School of Chemistry, The University of Manchester, Manchester, M1 7DN, UK.
Nigel S ScruttonCentre for Synthetic Biology of Fine and Speciality Chemicals, Manchester Institute of Biotechnology, School of Chemistry, The University of Manchester, Manchester, M1 7DN, UK. Electronic address: nigel.scrutton@manchester.ac.uk.
Derren J HeyesCentre for Synthetic Biology of Fine and Speciality Chemicals, Manchester Institute of Biotechnology, School of Chemistry, The University of Manchester, Manchester, M1 7DN, UK. Electronic address: Derren.Heyes@manchester.ac.uk.
University of Manchester · GB

Funding

Biotechnology and Biological Sciences Research Council BB/M017702/1
6 · The paper itself

Abstract

Protochlorophyllide oxidoreductase (POR) catalyzes the light-driven reduction of protochlorophyllide (Pchlide), an essential, regulatory step in chlorophyll biosynthesis. The unique requirement of the enzyme for light has provided the opportunity to investigate how light energy can be harnessed to power biological catalysis and enzyme dynamics. Excited state interactions between the Pchlide molecule and the protein are known to drive the subsequent reaction chemistry. However, the structural features of POR and active site residues that are important for photochemistry and catalysis are currently unknown, because there is no crystal structure for POR. Here, we have used static and time-resolved spectroscopic measurements of a number of active site variants to study the role of a number of residues, which are located in the proposed NADPH/Pchlide binding site based on previous homology models, in the reaction mechanism of POR. Our findings, which are interpreted in the context of a new improved structural model, have identified several residues that are predicted to interact with the coenzyme or substrate. Several of the POR variants have a profound effect on the photochemistry, suggesting that multiple residues are important in stabilizing the excited state required for catalysis. Our work offers insight into how the POR active site geometry is finely tuned by multiple active site residues to support enzyme-mediated photochemistry and reduction of Pchlide, both of which are crucial to the existence of life on Earth.

Indexed as

LightAmino Acid SequenceBinding SitesCatalytic DomainKineticsMolecular Dynamics SimulationMolecular Sequence DataMutagenesis, Site-DirectedNADPOxidoreductases Acting on CH-CH Group DonorsProtein Structure, TertiaryProtochlorophyllideSequence AlignmentSpectrophotometryNADPOxidoreductases Acting on CH-CH Group DonorsProtochlorophyllideprotochlorophyllide reductaseEnzyme catalysisLight activationPhotochemistryProtochlorophyllide oxidoreductase (POR)Site-directed mutagenesis

Identifiers

PMID27285815
PMCPMC4970445
OpenAlexW2419654806

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.