Evidence map›Paper›PMID 27284166›Full record

ArticleRNA (New York, N.Y.)2016

The essential function of the Trypanosoma brucei Trl1 homolog in procyclic cells is maturation of the intron-containing tRNATyr.

Raphael R S Lopes, Gilbert de O Silveira, Roberta Eitler, Raphael S Vidal, Alan Kessler, Scott Hinger, Zdeněk Paris, Juan D Alfonzo, Carla Polycarpo

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. tRNARNA (New York, N.Y.) · 2023
    Article
  5. The life and times of a tRNA.RNA (New York, N.Y.) · 2023
    Review
  6. Article
  7. Review
  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Raphael R S LopesInstituto de Bioquímica Médica Leopoldo de Meis, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Caixa Postal 68041, Brazil Instituto Nacional de Ciência e Tecnologia em Entomologia Molecular (INCT-EM), Caixa Postal 68041, Brazil.
Gilbert de O SilveiraInstituto de Bioquímica Médica Leopoldo de Meis, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Caixa Postal 68041, Brazil Instituto Nacional de Ciência e Tecnologia em Entomologia Molecular (INCT-EM), Caixa Postal 68041, Brazil.
Roberta EitlerInstituto de Bioquímica Médica Leopoldo de Meis, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Caixa Postal 68041, Brazil.
Raphael S VidalInstituto de Bioquímica Médica Leopoldo de Meis, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Caixa Postal 68041, Brazil.
Alan KesslerDepartment of Microbiology and The Center for RNA Biology, The Ohio State University, Columbus, Ohio 43210, USA.
Scott HingerDepartment of Microbiology and The Center for RNA Biology, The Ohio State University, Columbus, Ohio 43210, USA.
Zdeněk ParisBiology Centre, Institute of Parasitology, Czech Academy of Sciences, 37005 České Budějovice (Budweis), Czech Republic.
Juan D AlfonzoDepartment of Microbiology and The Center for RNA Biology, The Ohio State University, Columbus, Ohio 43210, USA.
Carla PolycarpoInstituto de Bioquímica Médica Leopoldo de Meis, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Caixa Postal 68041, Brazil Instituto Nacional de Ciência e Tecnologia em Entomologia Molecular (INCT-EM), Caixa Postal 68041, Brazil.
Universidade Federal do Rio de Janeiro · BRThe Ohio State University · USInstitute of Parasitology · CZ

Funding

tRNA editing by deamination: Balancing affinity and specifictyR01GM084065 · NIGMS · OHIO STATE UNIVERSITY · PI ALFONZO, JUAN D · 2008 to 2021
$4.0M
NIGMS NIH HHS R01 GM084065
6 · The paper itself

Abstract

Trypanosoma brucei, the etiologic agent of sleeping sickness, encodes a single intron-containing tRNA, tRNA(Tyr), and splicing is essential for its viability. In Archaea and Eukarya, tRNA splicing requires a series of enzymatic steps that begin with intron cleavage by a tRNA-splicing endonuclease and culminates with joining the resulting tRNA exons by a splicing tRNA ligase. Here we explored the function of TbTrl1, the T. brucei homolog of the yeast Trl1 tRNA ligase. We used a combination of RNA interference and molecular biology approaches to show that down-regulation of TbTrl1 expression leads to accumulation of intron-containing tRNA(Tyr) and a concomitant growth arrest at the G1 phase. These defects were efficiently rescued by expression of an "intronless" version of tRNA(Tyr) in the same RNAi cell line. Taken together, these experiments highlight the crucial importance of the TbTrl1 for tRNA(Tyr) maturation and viability, while revealing tRNA splicing as its only essential function.

Indexed as

IntronsAnimalsRNA, Transfer, TyrTrypanosoma brucei bruceiRNA, Transfer, TyrintronsplicingtRNAtRNA editingTrypanosoma

Identifiers

PMID27284166
PMCPMC4931112
OpenAlexW2419664286

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.