Evidence map›Paper›PMID 27283016›Full record

ArticleThe Journal of general virology2016

Naturally occurring recombination in ferret coronaviruses revealed by complete genome characterization.

Mart M Lamers, Saskia L Smits, Gadissa B Hundie, Lisette B Provacia, Marion Koopmans, Albert D M E Osterhaus, Bart L Haagmans, V Stalin Raj

Open access · greenAbstract read
In one paragraph

Article in The Journal of general virology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 17 citations in OpenAlex.

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  7. Persistent infection and pancytopenia associated with ferret systemic coronaviral disease in a domestic ferret.Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Mart M LamersDepartment of Viroscience, Erasmus MC, Rotterdam, The Netherlands.
Saskia L SmitsDepartment of Viroscience, Erasmus MC, Rotterdam, The Netherlands.
Gadissa B HundieDepartment of Viroscience, Erasmus MC, Rotterdam, The Netherlands.
Lisette B ProvaciaDepartment of Viroscience, Erasmus MC, Rotterdam, The Netherlands.
Marion KoopmansDepartment of Viroscience, Erasmus MC, Rotterdam, The Netherlands.
Albert D M E OsterhausArtemis One Health, Utrecht, The Netherlands.
Bart L HaagmansDepartment of Viroscience, Erasmus MC, Rotterdam, The Netherlands.
V Stalin RajDepartment of Viroscience, Erasmus MC, Rotterdam, The Netherlands.
Erasmus MC · NLErasmus University Rotterdam · NLArtemis One Health Research Foundation · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ferret coronaviruses (FRCoVs) exist as an enteric and a systemic pathotype, of which the latter is highly lethal to ferrets. To our knowledge, this study provides the first full genome sequence of a FRCoV, tentatively called FRCoV-NL-2010, which was detected in 2010 in ferrets in The Netherlands. Phylogenetic analysis showed that FRCoV-NL-2010 is most closely related to mink CoV, forming a separate clade of mustelid alphacoronavirus that split off early from other alphacoronaviruses. Based on sequence homology of the complete genome, we propose that these mustelid coronaviruses may be assigned to a new species. Comparison of FRCoV-NL-2010 with the partially sequenced ferret systemic coronavirus MSU-1 and ferret enteric coronavirus MSU-2 revealed that recombination in the spike, 3c and envelope genes occurred between different FRCoVs.

Indexed as

Genome, ViralRecombination, GeneticAnimalsCluster AnalysisCoronavirusCoronavirus InfectionsFerretsNetherlandsPhylogenyRNA, ViralSequence Analysis, DNASequence HomologyRNA, Viral

Identifiers

PMID27283016
PMCPMC7079585
OpenAlexW2409252052

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.