Evidence map›Paper›PMID 27280697›Full record

ArticleBiochemistry2016

Deletion of the N- or C-Terminal Helix of Apolipophorin III To Create a Four-Helix Bundle Protein.

Pankaj Dwivedi, Johana Rodriguez, Nnejiuwa U Ibe, Paul M M Weers

Abstract read
In one paragraph

Article in Biochemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 18 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Purification and membrane interactions of human KCNQ1Biochimica et biophysica acta. Biomembranes · 2022
    Article
  4. Article
  5. Article
  6. Review
  7. Fragments ofBBA advances · 2021
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Pankaj DwivediDepartment of Chemistry and Biochemistry, California State University , Long Beach, California 90840, United States.
Johana RodriguezDepartment of Chemistry and Biochemistry, California State University , Long Beach, California 90840, United States.
Nnejiuwa U IbeDepartment of Chemistry and Biochemistry, California State University , Long Beach, California 90840, United States.
Paul M M WeersDepartment of Chemistry and Biochemistry, California State University , Long Beach, California 90840, United States.
California State University, Long Beach · US

Funding

Supplement for CSULB Maximizing Access to Research Careers (MARC) UNDERGRADUATE STUDENT TRAINING IN ACADEMIC RESEARCH (U-STAR)T34GM008074 · NIGMS · CALIFORNIA STATE UNIVERSITY LONG BEACH · PI NARAYANASWAMI, VASANTHY · 1985 to 2022
$4.6M
Molecular mechanism of apolipoprotein binding to lipopolysaccharidesSC3GM089564 · NIGMS · CALIFORNIA STATE UNIVERSITY LONG BEACH · PI WEERS, PAUL MICHIEL · 2010 to 2022
$1.3M
NIGMS NIH HHS SC3 GM089564NIGMS NIH HHS T34 GM008074
6 · The paper itself

Abstract

Apolipophorin III (apoLp-III) is an exchangeable apolipoprotein found in insects and plays an important function in lipid transport. The protein has an unusual five-helix bundle architecture, deviating from the common four-helix bundle motif. To understand the role of the additional helix in apoLp-III, the N-terminal or C-terminal helix was deleted to create a putative four-helix bundle protein. While the protein lacking helix-1 could be expressed in bacteria albeit at reduced yields, apoLp-III lacking helix-5 could not be produced. Mutational analysis by truncating helix-5 showed that a minimum segment of approximately one-third of the C-terminal helix is required for protein expression. The variant lacking helix-5 was produced by inserting a methionine residue between helix-4 and -5; subsequent cyanogenbromide cleavage generated the four-helix variant. Both N- and C-terminal helix deletion variants displayed significantly reduced helical content, protein stability, and tertiary structure. Despite the significantly altered structure, the variants were still fully functional. The rate of dimyristoylphosphatidylcholine vesicle solubilization was enhanced 4-5-fold compared to the wild-type protein, and the deletion variants were effective in binding to lipolyzed low density lipoprotein thereby preventing lipoprotein aggregation. These results show that the additional helix of apoLp-III is not essential for lipid binding but is required for proper folding to keep the protein into a stable conformation.

Indexed as

AnimalsApolipoproteinsBiological TransportLipoproteins, LDLLocusta migratoriaModels, MolecularMutagenesis, Site-DirectedMutationProtein BindingProtein ConformationSequence Deletionapolipophorin IIIApolipoproteinsLipoproteins, LDL

Identifiers

PMID27280697
PMCPMC5518689
OpenAlexW2416481542

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.