Evidence map›Paper›PMID 27279370›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2016

HDAC3 Is Required for the Downregulation of RORγt during Thymocyte Positive Selection.

Rachael L Philips, Meibo W Chen, Douglas C McWilliams, Paul J Belmonte, Megan M Constans, Virginia Smith Shapiro

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Article
  3. Role of Histone Deacetylases in T-Cell Development and Function.International journal of molecular sciences · 2022
    Review
  4. Article
  5. Role of Epigenetics in the Regulation of Immune Functions of the Skin.The Journal of investigative dermatology · 2021
    Review
  6. Review
  7. Article
  8. Review
  9. Recent Update of HDAC Inhibitors in Lymphoma.Frontiers in cell and developmental biology · 2020
    Review
  10. Article
  11. Article
  12. Article
  13. Integrative regulation of physiology by histone deacetylase 3.Nature reviews. Molecular cell biology · 2019
    Review
  14. Article
  15. Review
  16. Histone deacetylase function in CD4Nature reviews. Immunology · 2018
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Rachael L PhilipsDepartment of Immunology, Mayo Clinic, Rochester, MN 55905.
Meibo W ChenDepartment of Immunology, Mayo Clinic, Rochester, MN 55905.
Douglas C McWilliamsDepartment of Immunology, Mayo Clinic, Rochester, MN 55905.
Paul J BelmonteDepartment of Immunology, Mayo Clinic, Rochester, MN 55905.
Megan M ConstansDepartment of Immunology, Mayo Clinic, Rochester, MN 55905.
Virginia Smith ShapiroDepartment of Immunology, Mayo Clinic, Rochester, MN 55905 Shapiro.Virginia1@mayo.edu.
Mayo Clinic in Arizona · US

Funding

Regulation of T cell maturationR01AI083279 · NIAID · MAYO CLINIC ROCHESTER · PI SHAPIRO, VIRGINIA SMITH · 2010 to 2019
$3.8M
PHD TRAINING PROGRAM IN BASIC IMMUNOLOGYT32AI007425 · NIAID · MAYO CLINIC ROCHESTER · PI SHAPIRO, VIRGINIA SMITH · 1995 to 2020
$3.6M
NIAID NIH HHS R01 AI083279NIAID NIH HHS T32 AI007425
6 · The paper itself

Abstract

To generate functional peripheral T cells, proper gene regulation during T cell development is critical. In this study, we found that histone deacetylase (HDAC) 3 is required for T cell development. T cell development in CD2-icre HDAC3 conditional knockout (cKO) mice (HDAC3-cKO) was blocked at positive selection, resulting in few CD4 and CD8 T cells, and it could not be rescued by a TCR transgene. These single-positive thymocytes failed to upregulate Bcl-2, leading to increased apoptosis. HDAC3-cKO mice failed to downregulate retinoic acid-related orphan receptor (ROR) γt during positive selection, similar to the block in positive selection in RORγt transgenic mice. In the absence of HDAC3, the RORC promoter was hyperacetylated. In the periphery, the few CD4 T cells present were skewed toward RORγt(+) IL-17-producing Th17 cells, leading to inflammatory bowel disease. Positive selection of CD8 single-positive thymocytes was restored in RORγt-KO Bcl-xL transgenic HDAC3-cKO mice, demonstrating that HDAC3 is required at positive selection to downregulate RORγt.

Indexed as

AnimalsCell DifferentiationChromatin ImmunoprecipitationDown-RegulationFlow CytometryGene Expression RegulationHistone Deacetylase 3Histone DeacetylasesMiceMice, KnockoutMice, TransgenicNuclear Receptor Subfamily 1, Group F, Member 3ThymocytesHistone Deacetylase 3Histone DeacetylasesNuclear Receptor Subfamily 1, Group F, Member 3

Identifiers

PMID27279370
PMCPMC4940140
OpenAlexW2416232348

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.