Evidence map›Paper›PMID 27279039›Full record

ArticleMolecular microbiology2016

Global Tn-seq analysis of carbohydrate utilization and vertebrate infectivity of Borrelia burgdorferi.

Erin B Troy, Tao Lin, Lihui Gao, David W Lazinski, Maureen Lundt, Andrew Camilli, Steven J Norris, Linden T Hu

Open access · greenAbstract read
In one paragraph

Article in Molecular microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
9.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 49 citations in OpenAlex.

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  11. Genetic Manipulation ofCurrent issues in molecular biology · 2021
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  12. Review
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  14. Lyme Disease Pathogenesis.Current issues in molecular biology · 2021
    Review
  15. Gene Regulation and Transcriptomics.Current issues in molecular biology · 2021
    Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Erin B TroyDepartment of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA.
Tao LinDepartment of Pathology and Laboratory Medicine, University of Texas Medical Center at Houston, Houston, TX.
Lihui GaoDepartment of Pathology and Laboratory Medicine, University of Texas Medical Center at Houston, Houston, TX.
David W LazinskiDepartment of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA.
Maureen LundtDepartment of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA.
Andrew CamilliDepartment of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA.
Steven J NorrisDepartment of Pathology and Laboratory Medicine, University of Texas Medical Center at Houston, Houston, TX.
Linden T HuDepartment of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, MA. linden.hu@tufts.edu.
Tufts University · USTexas Medical Center · USHoward Hughes Medical Institute · USThe University of Texas Health Science Center at Houston · US

Funding

Virulence Determinants of Borrelia burgdorferiR01AI059048 · NIAID · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI NORRIS, STEVEN J. · 2004 to 2016
$5.3M
Role of carbon availability in environmental adaptation by Borrelia burgdorferiR21AI111317 · NIAID · TUFTS UNIVERSITY BOSTON · PI HU, LINDEN T, LIN, TAO · 2015 to 2016
$475k
Use of massively parallel sequencing for identification of B. burgdorferi virulenR21AI103905 · NIAID · TUFTS MEDICAL CENTER · PI HU, LINDEN T, LIN, TAO · 2013 to 2014
$433k
Uncovering B. burgdorferi virulence determinants by next generation sequencingF32AI098388 · NIAID · TUFTS MEDICAL CENTER · PI TROY, ERIN BRIGID · 2012 to 2013
$109k
NIAID NIH HHS F32 AI098388NIAID NIH HHS R01 AI059048NIAID NIH HHS R21 AI103905NIAID NIH HHS R21 AI111317
6 · The paper itself

Abstract

Borrelia burgdorferi maintains a complex life cycle between tick and vertebrate hosts. Although some genes have been identified as contributing to bacterial adaptation in the different hosts, the list is incomplete. In this manuscript, we report the first use of transposon mutagenesis combined with high-throughput sequencing (Tn-seq) in B. burgdorferi. We utilize the technique to investigate mechanisms of carbohydrate utilization in B. burgdorferi and the role of carbohydrate metabolism during mouse infection. We performed genetic fitness analyses to identify genes encoding factors contributing to growth on glucose, maltose, mannose, trehalose and N-acetyl-glucosamine. We obtained insight into the potential functions of proteins predicted to be involved in carbohydrate utilization and identified additional factors previously unrecognized as contributing to the metabolism of the tested carbohydrates. Strong phenotypes were observed for the putative carbohydrate phosphotransferase transporters BB0408 and BBB29 as well as the response regulator Rrp1. We further validated Tn-seq for use in mouse studies and were able to correctly identify known infectivity factors as well as additional transporters and genes on lp54 that may contribute to optimal mouse infection. As such, this study establishes Tn-seq as a powerful method for both in vitro and in vivo studies of B. burgdorferi.

Indexed as

AnimalsBacterial ProteinsBorrelia burgdorferiCarbohydrate MetabolismDNA Transposable ElementsGene Expression Regulation, BacterialGenetic FitnessHigh-Throughput Nucleotide SequencingLyme DiseaseMembrane Transport ProteinsMiceMice, Inbred C57BLMutagenesis, InsertionalPhosphotransferasesTicksVirulence FactorsBacterial ProteinsDNA Transposable ElementsMembrane Transport ProteinsPhosphotransferasesVirulence Factors

Identifiers

PMID27279039
PMCPMC5028225
OpenAlexW2435912991

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.