Evidence map›Paper›PMID 27278126›Full record

ArticleGenes and immunity2016

GWAS analysis implicates NF-κB-mediated induction of inflammatory T cells in multiple sclerosis.

J P Hussman, A H Beecham, M Schmidt, E R Martin, J L McCauley, J M Vance, J L Haines, M A Pericak-Vance

Open access · hybridAbstract read
In one paragraph

Article in Genes and immunity, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 80 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. NF-κB in inflammation and cancer.Cellular & molecular immunology · 2025
    Review
  5. Review
  6. Review
  7. Role of pH-sensing receptors in colitis.Pflugers Archiv : European journal of physiology · 2024
    Review
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  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
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  15. Article
  16. Article
  17. Article
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  19. A catalog of GWAS fine-mapping efforts in autoimmune disease.American journal of human genetics · 2021
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

J P HussmanHussman Foundation, Ellicott City, MD, USA.
A H BeechamJohn P. Hussman Institute for Human Genomics, University of Miami, Miller School of Medicine, Miami, FL, USA.
M SchmidtJohn P. Hussman Institute for Human Genomics, University of Miami, Miller School of Medicine, Miami, FL, USA.
E R MartinJohn P. Hussman Institute for Human Genomics, University of Miami, Miller School of Medicine, Miami, FL, USA.
J L McCauleyJohn P. Hussman Institute for Human Genomics, University of Miami, Miller School of Medicine, Miami, FL, USA.
J M VanceJohn P. Hussman Institute for Human Genomics, University of Miami, Miller School of Medicine, Miami, FL, USA.
J L HainesDepartment of Epidemiology & Biostatistics, Case Western Reserve University, Cleveland, OH, USA.
M A Pericak-VanceJohn P. Hussman Institute for Human Genomics, University of Miami, Miller School of Medicine, Miami, FL, USA.
University of Miami · USDr. John T. Macdonald Foundation · USCase Western Reserve University · USJohn P. Hussman Foundation · US

Funding

A Haplotype Map for Multiple SclerosisR01NS049477 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HAUSER, STEPHEN L · 2005 to 2014
$15.3M
NINDS NIH HHS R01 NS049477
6 · The paper itself

Abstract

To identify genes and biologically relevant pathways associated with risk to develop multiple sclerosis (MS), the Genome-Wide Association Studies noise reduction method (GWAS-NR) was applied to MS genotyping data. Regions of association were defined based on the significance of linkage disequilibrium blocks. Candidate genes were cross-referenced based on a review of current literature, with attention to molecular function and directly interacting proteins. Supplementary annotations and pathway enrichment scores were generated using The Database for Annotation, Visualization and Integrated Discovery. The candidate set of 220 MS susceptibility genes prioritized by GWAS-NR was highly enriched with genes involved in biological pathways related to positive regulation of cell, lymphocyte and leukocyte activation (P=6.1E-15, 1.2E-14 and 5.0E-14, respectively). Novel gene candidates include key regulators of NF-κB signaling and CD4+ T helper type 1 (Th1) and T helper type 17 (Th17) lineages. A large subset of MS candidate genes prioritized by GWAS-NR were found to interact in a tractable pathway regulating the NF-κB-mediated induction and infiltration of pro-inflammatory Th1/Th17 T-cell lineages, and maintenance of immune tolerance by T-regulatory cells. This mechanism provides a biological context that potentially links clinical observations in MS to the underlying genetic landscape that may confer susceptibility.

Indexed as

Genetic LociCase-Control StudiesCD4-Positive T-LymphocytesGenome-Wide Association StudyHumansLymphocyte ActivationMultiple SclerosisNF-kappa BSignal TransductionNF-kappa B

Identifiers

PMID27278126
PMCPMC4956564
OpenAlexW2413059886

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.