Evidence map›Paper›PMID 27277032›Full record

ArticleMedical physics2016

MRI texture features as biomarkers to predict MGMT methylation status in glioblastomas.

Panagiotis Korfiatis, Timothy L Kline, Lucie Coufalova, Daniel H Lachance, Ian F Parney, Rickey E Carter, Jan C Buckner, Bradley J Erickson

Open access · hybridAbstract read
In one paragraph

Article in Medical physics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 96 papers, 6 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
96citing papers in PubMed, 6 pooled it
12.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

96 citing papers in PubMed, 6 syntheses or guidelines pooled it, 163 citations in OpenAlex.

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  6. Clinically Relevant Imaging Features forAJNR. American journal of neuroradiology · 2018
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  17. Development of A Radiomic Model forInternational journal of molecular sciences · 2023
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36 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Panagiotis KorfiatisDepartment of Radiology, Mayo Clinic, 200 1st Street SW, Rochester, Minnesota 55905.
Timothy L KlineDepartment of Radiology, Mayo Clinic, 200 1st Street SW, Rochester, Minnesota 55905.
Lucie CoufalovaDepartment of Radiology, Mayo Clinic, 200 1st Street SW, Rochester, Minnesota 55905; Department of Neurosurgery of First Faculty of Medicine, Charles University in Prague, Military University Hospital, Prague 128 21, Czech Republic; and International Clinical Research Center, St. Anne's University Hospital Brno, Brno 656 91, Czech Republic.
Daniel H LachanceDepartment of Neurology, Mayo Clinic, 200 1st Street SW, Rochester, Minnesota 55905.
Ian F ParneyDepartment of Neurologic Surgery, Mayo Clinic, 200 1st Street SW, Rochester, Minnesota 55905.
Rickey E CarterDepartment of Health Sciences Research, Mayo Clinic, 200 1st Street SW, Rochester, Minnesota 55905.
Jan C BucknerDepartment of Medical Oncology, Mayo Clinic, 200 1st Street SW, Rochester, Minnesota 55905.
Bradley J EricksonDepartment of Radiology, Mayo Clinic, 200 1st Street SW, Rochester, Minnesota 55905.
Mayo Clinic · USMayo Clinic in Florida · US

Funding

Objective decision support environment for clinical trialsU01CA160045 · NCI · MAYO CLINIC ROCHESTER · PI ERICKSON, BRADLEY J. · 2012 to 2016
$2.6M
NCI NIH HHS U01 CA160045
6 · The paper itself

Abstract

purposeImaging biomarker research focuses on discovering relationships between radiological features and histological findings. In glioblastoma patients, methylation of the O(6)-methylguanine methyltransferase (MGMT) gene promoter is positively correlated with an increased effectiveness of current standard of care. In this paper, the authors investigate texture features as potential imaging biomarkers for capturing the MGMT methylation status of glioblastoma multiforme (GBM) tumors when combined with supervised classification schemes.

methodsA retrospective study of 155 GBM patients with known MGMT methylation status was conducted. Co-occurrence and run length texture features were calculated, and both support vector machines (SVMs) and random forest classifiers were used to predict MGMT methylation status.

resultsThe best classification system (an SVM-based classifier) had a maximum area under the receiver-operating characteristic (ROC) curve of 0.85 (95% CI: 0.78-0.91) using four texture features (correlation, energy, entropy, and local intensity) originating from the T2-weighted images, yielding at the optimal threshold of the ROC curve, a sensitivity of 0.803 and a specificity of 0.813.

conclusionsResults show that supervised machine learning of MRI texture features can predict MGMT methylation status in preoperative GBM tumors, thus providing a new noninvasive imaging biomarker.

Indexed as

DNA MethylationBiomarkers, TumorBrainBrain NeoplasmsDNA Modification MethylasesDNA Repair EnzymesGlioblastomaHumansMagnetic Resonance ImagingPromoter Regions, GeneticRetrospective StudiesROC CurveSupport Vector MachineTumor Suppressor ProteinsBiomarkers, TumorDNA Modification MethylasesDNA Repair EnzymesMGMT protein, humanTumor Suppressor Proteins

Identifiers

PMID27277032
PMCPMC4866963
OpenAlexW2367516440

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.