Evidence map›Paper›PMID 27276268›Full record

ArticleBiophysical journal2016

Graphene Symmetry Amplified by Designed Peptide Self-Assembly.

Gina-Mirela Mustata, Yong Ho Kim, Jian Zhang, William F DeGrado, Gevorg Grigoryan, Meni Wanunu

Abstract readValidation Study
In one paragraph

Article in Biophysical journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Nanoscale · 2022
    Article
  5. Review
  6. Remote nongenetic optical modulation of neuronal activity using fuzzy graphene.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  7. Article
  8. Quarterly reviews of biophysics · 2020
    Review
  9. Article
  10. Magnetic control of graphitic microparticles in aqueous solutions.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  11. Design of self-assembling transmembrane helical bundles to elucidate principles required for membrane protein folding and ion transport.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Review
  12. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Gina-Mirela MustataDepartment of Physics, Northeastern University, Boston, Massachusetts.
Yong Ho KimSKKU Advanced Institute of Nanotechnology and Department of Chemistry, Sungkyunkwan University, Seoul, Korea; Center for Neuroscience Imaging Research, Institute for Basic Science(IBS), Suwon, Korea. Electronic address: yhkim94@skku.edu.
Jian ZhangDepartment of Computer Science, Dartmouth College, Hanover, New Hampshire.
William F DeGradoDepartment of Pharmaceutical Chemistry, University of California San Francisco, San Francisco.
Gevorg GrigoryanDepartment of Computer Science, Dartmouth College, Hanover, New Hampshire; Department of Biological Sciences, Dartmouth College, Hanover, New Hampshire. Electronic address: gevorg.grigoryan@dartmouth.edu.
Meni WanunuDepartment of Physics, Northeastern University, Boston, Massachusetts. Electronic address: wanunu@neu.edu.

Funding

Understanding the role of RNA-binding protein mutations in cancerP20GM113132 · NIGMS · DARTMOUTH COLLEGE · PI MADDEN, DEAN R · 2016 to 2025
$25.9M
De novo design of alpha-helical bundlesR37GM054616 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI DEGRADO, WILLIAM · 2004 to 2013
$3.6M
DE NOVO DESIGN OF ALPHA HELICAL BUNDLESR01GM054616 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI DEGRADO, WILLIAM · 1996 to 2016
$2.4M
NIGMS NIH HHS P20 GM113132NIGMS NIH HHS R01 GM054616NIGMS NIH HHS R37 GM054616
6 · The paper itself

Abstract

We present a strategy for designed self-assembly of peptides into two-dimensional monolayer crystals on the surface of graphene and graphite. As predicted by computation, designed peptides assemble on the surface of graphene to form very long, parallel, in-register β-sheets, which we call β-tapes. Peptides extend perpendicularly to the long axis of each β-tape, defining its width, with hydrogen bonds running along the axis. Tapes align on the surface to create highly regular microdomains containing 4-nm pitch striations. Moreover, in agreement with calculations, the atomic structure of the underlying graphene dictates the arrangement of the β-tapes, as they orient along one of six directions defined by graphene's sixfold symmetry. A cationic-assembled peptide surface is shown here to strongly adhere to DNA, preferentially orienting the double helix along β-tape axes. This orientational preference is well anticipated from calculations, given the underlying peptide layer structure. These studies illustrate how designed peptides can amplify the Ångstrom-level atomic symmetry of a surface onto the micrometer scale, further imparting long-range directional order onto the next level of assembly. The remarkably stable nature of these assemblies under various environmental conditions suggests applications in enzymelike catalysis, biological interfaces for cellular recognition, and two-dimensional platforms for studying DNA-peptide interactions.

Indexed as

Molecular Dynamics SimulationProtein MultimerizationCationsDNAEndopeptidase KGraphiteKineticsMicroscopy, Atomic ForcePeptidesProtein BindingProtein StabilityProtein Structure, SecondaryStatic ElectricityWaterCationsDNAEndopeptidase KGraphitePeptidesWater

Identifiers

PMID27276268
PMCPMC4906377

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.