Evidence map›Paper›PMID 27275925›Full record

ArticlePloS one2016

Transcriptome Analysis and Gene Identification in the Pulmonary Artery of Broilers with Ascites Syndrome.

Fei Yang, Huabin Cao, Qingyang Xiao, Xiaoquan Guo, Yu Zhuang, Caiying Zhang, Tiancheng Wang, Huayuan Lin, Yalu Song, Guoliang Hu and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 37 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Transcriptomic Study on the Lungs of Broilers with Ascites Syndrome.Animals : an open access journal from MDPI · 2023
    Article
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  8. Molecular Mechanisms UnderlyingFrontiers in immunology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Fei YangInstitute of Animal Population Health, College of Animal Science and Technology, JiangXi Agriculture University, N.O. 1101, Zhimin Avenue, Nanchang Economic and Technological Development District Nanchang, 330045, P. R. China.
Huabin CaoInstitute of Animal Population Health, College of Animal Science and Technology, JiangXi Agriculture University, N.O. 1101, Zhimin Avenue, Nanchang Economic and Technological Development District Nanchang, 330045, P. R. China.
Qingyang XiaoInstitute of Animal Population Health, College of Animal Science and Technology, JiangXi Agriculture University, N.O. 1101, Zhimin Avenue, Nanchang Economic and Technological Development District Nanchang, 330045, P. R. China.
Xiaoquan GuoInstitute of Animal Population Health, College of Animal Science and Technology, JiangXi Agriculture University, N.O. 1101, Zhimin Avenue, Nanchang Economic and Technological Development District Nanchang, 330045, P. R. China.
Yu ZhuangInstitute of Animal Population Health, College of Animal Science and Technology, JiangXi Agriculture University, N.O. 1101, Zhimin Avenue, Nanchang Economic and Technological Development District Nanchang, 330045, P. R. China.
Caiying ZhangInstitute of Animal Population Health, College of Animal Science and Technology, JiangXi Agriculture University, N.O. 1101, Zhimin Avenue, Nanchang Economic and Technological Development District Nanchang, 330045, P. R. China.
Tiancheng WangInstitute of Animal Population Health, College of Animal Science and Technology, JiangXi Agriculture University, N.O. 1101, Zhimin Avenue, Nanchang Economic and Technological Development District Nanchang, 330045, P. R. China.
Huayuan LinInstitute of Animal Population Health, College of Animal Science and Technology, JiangXi Agriculture University, N.O. 1101, Zhimin Avenue, Nanchang Economic and Technological Development District Nanchang, 330045, P. R. China.
Yalu SongInstitute of Animal Population Health, College of Animal Science and Technology, JiangXi Agriculture University, N.O. 1101, Zhimin Avenue, Nanchang Economic and Technological Development District Nanchang, 330045, P. R. China.
Guoliang HuInstitute of Animal Population Health, College of Animal Science and Technology, JiangXi Agriculture University, N.O. 1101, Zhimin Avenue, Nanchang Economic and Technological Development District Nanchang, 330045, P. R. China.
Ping LiuInstitute of Animal Population Health, College of Animal Science and Technology, JiangXi Agriculture University, N.O. 1101, Zhimin Avenue, Nanchang Economic and Technological Development District Nanchang, 330045, P. R. China.
Jiangxi Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPulmonary arterial hypertension, also known as Ascites syndrome (AS), remains a clinically challenging disease with a large impact on both humans and broiler chickens. Pulmonary arterial remodeling presents a key step in the development of AS. The precise molecular mechanism of pulmonary artery remodeling regulating AS progression remains unclear. METHODOLOGY/PRINCIPAL

findingsWe obtained pulmonary arteries from two positive AS and two normal broilers for RNA sequencing (RNA-seq) analysis and pathological observation. RNA-seq analysis revealed a total of 895 significantly differentially expressed genes (DEGs) with 437 up-regulated and 458 down-regulated genes, which were significantly enriched to 12 GO (Gene Ontology) terms and 4 KEGG (Kyoto Encyclopedia of Genes and Genomes) pathways (Padj<0.05) regulating pulmonary artery remodeling and consequently occurrence of AS. These GO terms and pathways include ribosome, Jak-STAT and NOD-like receptor signaling pathways which regulate pulmonary artery remodeling through vascular smooth cell proliferation, inflammation and vascular smooth cell proliferation together. Some notable DEGs within these pathways included downregulation of genes like RPL 5, 7, 8, 9, 14; upregulation of genes such as IL-6, K60, STAT3, STAT5 Pim1 and SOCS3; IKKα, IkB, P38, five cytokines IL-6, IL8, IL-1β, IL-18, and MIP-1β. Six important regulators of pulmonary artery vascular remodeling and construction like CYP1B1, ALDH7A1, MYLK, CAMK4, BMP7 and INOS were upregulated in the pulmonary artery of AS broilers. The pathology results showed that the pulmonary artery had remodeled and become thicker in the disease group. CONCLUSIONS/SIGNIFICANCE: Our present data suggested some specific components of the complex molecular circuitry regulating pulmonary arterial remodeling underlying AS progression in broilers. We revealed some valuable candidate genes and pathways that involved in pulmonary artery remodeling further contributing to the AS progression.

Indexed as

Gene Expression ProfilingGene Expression RegulationAnimalsAvian ProteinsChickensHumansHypertension, PulmonaryPoultry DiseasesPulmonary ArteryVascular RemodelingAvian Proteins

Identifiers

PMID27275925
PMCPMC4898705
OpenAlexW2411420993

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.