ArticleInternational journal of molecular sciences2016
The Complete Chloroplast Genome Sequences of the Medicinal Plant Pogostemon cablin.
Article in International journal of molecular sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
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29 citing papers in PubMed, 66 citations in OpenAlex.
- Decoding the Chloroplast Genome of Bitterwood (Ecology and evolution · 2025Article
- Comparative analysis of whole chloroplast genomes of three common species of Nekemias from vine tea.Scientific reports · 2024Article
- Comparative chloroplast genomes of Dactylicapnos species: insights into phylogenetic relationships.BMC plant biology · 2024Article
- Comparative Analysis on the Codon Usage Pattern of the Chloroplast Genomes in Malus Species.Biochemical genetics · 2023Article
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- The complete chloroplast genome sequence of the medicinal plant Abrus pulchellus subsp. cantoniensis: genome structure, comparative and phylogenetic relationship analysis.Journal of plant research · 2022Article
- Comparative genome sequence and phylogenetic analysis of chloroplast for evolutionary relationship amongSaudi journal of biological sciences · 2022Article
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- Complete chloroplast genome sequences ofFrontiers in plant science · 2022Article
- The complete chloroplast genome ofMitochondrial DNA. Part B, Resources · 2022Article
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- A Comparative Analysis of the Chloroplast Genomes of FourFrontiers in genetics · 2022Article
- Review
- Comparative plastomic analysis and insights into the phylogeny ofPlant diversity · 2021Article
- Transcriptome analysis of twoPeerJ · 2021Article
- The Complete Chloroplast Genome of the VulnerablePlants (Basel, Switzerland) · 2020Article
- Molecular markers from the chloroplast genome of rose provide a complementary tool for variety discrimination and profiling.Scientific reports · 2020Article
- Complete Chloroplast Genome Sequencing and Phylogenetic Analysis of TwoBioMed research international · 2020Article
- Full-length transcriptome sequencing and methyl jasmonate-induced expression profile analysis of genes related to patchoulol biosynthesis and regulation in Pogostemon cablin.BMC plant biology · 2019Article
- Complete plastome sequence ofPeerJ · 2019Article
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Authors and funding
6 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Pogostemon cablin, the natural source of patchouli alcohol, is an important herb in the Lamiaceae family. Here, we present the entire chloroplast genome of P. cablin. This genome, with 38.24% GC content, is 152,460 bp in length. The genome presents a typical quadripartite structure with two inverted repeats (each 25,417 bp in length), separated by one small and one large single-copy region (17,652 and 83,974 bp in length, respectively). The chloroplast genome encodes 127 genes, of which 107 genes are single-copy, including 79 protein-coding genes, four rRNA genes, and 24 tRNA genes. The genome structure, GC content, and codon usage of this chloroplast genome are similar to those of other species in the family, except that it encodes less protein-coding genes and tRNA genes. Phylogenetic analysis reveals that P. cablin diverged from the Scutellarioideae clade about 29.45 million years ago (Mya). Furthermore, most of the simple sequence repeats (SSRs) are short polyadenine or polythymine repeats that contribute to high AT content in the chloroplast genome. Complete sequences and annotation of P. cablin chloroplast genome will facilitate phylogenic, population and genetic engineering research investigations involving this particular species.
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