Evidence map›Paper›PMID 27274857›Full record

ArticleHuman genome variation2016

A catalog of hemizygous variation in 127 22q11 deletion patients.

Matthew S Hestand, Beata A Nowakowska, Elfi Vergaelen, Jeroen Van Houdt, Luc Dehaspe, Joshua A Suhl, Jurgen Del-Favero, Geert Mortier, Elaine Zackai, Ann Swillen and 6 more

Open access · goldAbstract read
In one paragraph

Article in Human genome variation, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.0field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 7 institutions in 2 countries.

Matthew S HestandDepartment of Human Genetics, KU Leuven , Leuven, Belgium.
Beata A NowakowskaDepartment of Human Genetics, KU Leuven, Leuven, Belgium; Institute of Mother and Child, Warsaw, Poland.
Elfi VergaelenDepartment of Human Genetics, KU Leuven , Leuven, Belgium.
Jeroen Van HoudtDepartment of Human Genetics, KU Leuven, Leuven, Belgium; Genomics Core, UZ Leuven, Leuven, Belgium.
Luc DehaspeGenomics Core, UZ Leuven , Leuven, Belgium.
Joshua A SuhlDepartment of Human Genetics, Emory University School of Medicine , Atlanta, GA, USA.
Jurgen Del-FaveroVIB Departement Moleculaire Genetica, University of Antwerp , Antwerp, Belgium.
Geert MortierDepartment of Medical Genetics, Antwerp University Hospital , Edegem, Belgium.
Elaine ZackaiHuman Genetics, The Children's Hospital of Philadelphia, Philadelphia, PA, USA; Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Ann SwillenDepartment of Human Genetics, KU Leuven , Leuven, Belgium.
Koenraad DevriendtDepartment of Human Genetics, KU Leuven , Leuven, Belgium.
Raquel E GurPerelman School of Medicine, University of Pennsylvania , Philadelphia, PA, USA.
Donna M McDonald-McGinnHuman Genetics, The Children's Hospital of Philadelphia, Philadelphia, PA, USA; Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Stephen T WarrenDepartment of Human Genetics, Emory University School of Medicine , Atlanta, GA, USA.
Beverly S EmanuelHuman Genetics, The Children's Hospital of Philadelphia, Philadelphia, PA, USA; Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Joris R VermeeschDepartment of Human Genetics, KU Leuven , Leuven, Belgium.
KU Leuven · BEChildren's Hospital of Philadelphia · USEmory University · USAntwerp University Hospital · BEUniversitair Ziekenhuis Leuven · BEUniversity of Antwerp · BEUniversity of Pennsylvania · US

Funding

Project 2: Genetic Mechanisms of Non-syndromic Congenital Cardiac DefectsP01HD070454 · NICHD · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI GOLDMUNTZ, ELIZABETH · 2011 to 2020
$14.0M
1/2-Brain-Behavior and Genetic Studies of the 22q11DSU01MH087626 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI GUR, RAQUEL E · 2010 to 2014
$6.5M
2/5 International Consortium on Brain and Behavior in 22q11.2 Deletion SyndromeU01MH101720 · NIMH · EMORY UNIVERSITY · PI WARREN, STEPHEN T. · 2013 to 2016
$6.2M
2/2 Brain, Behavior and Genetic Studies of the 22q11 Deletion StudiesU01MH087636 · NIMH · CHILDREN'S HOSP OF PHILADELPHIA · PI EMANUEL, BEVERLY S · 2010 to 2014
$4.6M
1/5 International Consortium on Brain and Behavior in 22q11.2 Deletion SyndromeU01MH101719 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI GUR, RAQUEL E · 2013 to 2016
$2.8M
5/5 International Consortium on Brain and Behavior in 22q11.2 Deletion SyndromeU01MH101724 · NIMH · CARDIFF UNIVERSITY · PI ARANGO, CELSO, MURPHY, DECLAN · 2013 to 2016
$744k
NICHD NIH HHS P01 HD070454NIMH NIH HHS U01 MH087626NIMH NIH HHS U01 MH087636NIMH NIH HHS U01 MH101719NIMH NIH HHS U01 MH101720NIMH NIH HHS U01 MH101724
6 · The paper itself

Abstract

The 22q11.2 deletion syndrome is the most common microdeletion disorder, with wide phenotypic variability. To investigate variation within the non-deleted allele we performed targeted resequencing of the 22q11.2 region for 127 patients, identifying multiple deletion sizes, including two deletions with atypical breakpoints. We cataloged ~12,000 hemizygous variant positions, of which 84% were previously annotated. Within the coding regions 95 non-synonymous variants, three stop gains, and two frameshift insertions were identified, some of which we speculate could contribute to atypical phenotypes. We also catalog tolerability of 22q11 gene mutations based on related autosomal recessive disorders in man, embryonic lethality in mice, cross-species conservation and observations that some genes harbor more or less variants than expected. This extensive catalog of hemizygous variants will serve as a blueprint for future experiments to correlate 22q11DS variation with phenotype.

Identifiers

PMID27274857
PMCPMC4892188
OpenAlexW2235791093

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.