Evidence map›Paper›PMID 27274361›Full record

ArticleStandards in genomic sciences2016

Complete genome sequence of Leuconostoc gelidum subsp. gasicomitatum KG16-1, isolated from vacuum-packaged vegetable sausages.

Margarita Andreevskaya, Jenni Hultman, Per Johansson, Pia Laine, Lars Paulin, Petri Auvinen, Johanna Björkroth

Open access · goldAbstract readCase Reports
In one paragraph

Article in Standards in genomic sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Comparative Genomics ofFrontiers in microbiology · 2019
    Article
  5. Article
  6. Article
  7. Complete genome sequence ofStandards in genomic sciences · 2017
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Margarita AndreevskayaInstitute of Biotechnology, University of Helsinki, Viikinkaari 5D, 00790 Helsinki, Finland.
Jenni HultmanDepartment of Food Hygiene and Environmental Health, University of Helsinki, Agnes Sjöbergin katu 2, 00790 Helsinki, Finland.
Per JohanssonDepartment of Food Hygiene and Environmental Health, University of Helsinki, Agnes Sjöbergin katu 2, 00790 Helsinki, Finland.
Pia LaineInstitute of Biotechnology, University of Helsinki, Viikinkaari 5D, 00790 Helsinki, Finland.
Lars PaulinInstitute of Biotechnology, University of Helsinki, Viikinkaari 5D, 00790 Helsinki, Finland.
Petri AuvinenInstitute of Biotechnology, University of Helsinki, Viikinkaari 5D, 00790 Helsinki, Finland.
Johanna BjörkrothDepartment of Food Hygiene and Environmental Health, University of Helsinki, Agnes Sjöbergin katu 2, 00790 Helsinki, Finland.
University of Helsinki · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Leuconostoc gelidum subsp. gasicomitatum is a predominant lactic acid bacterium (LAB) in spoilage microbial communities of different kinds of modified-atmosphere packaged (MAP) food products. So far, only one genome sequence of a poultry-originating type strain of this bacterium (LMG 18811(T)) has been available. In the current study, we present the completely sequenced and functionally annotated genome of strain KG16-1 isolated from a vegetable-based product. In addition, six other vegetable-associated strains were sequenced to study possible "niche" specificity suggested by recent multilocus sequence typing. The genome of strain KG16-1 consisted of one circular chromosome and three plasmids, which together contained 2,035 CDSs. The chromosome carried at least three prophage regions and one of the plasmids encoded a galactan degradation cluster, which might provide a survival advantage in plant-related environments. The genome comparison with LMG 18811(T) and six other vegetable strains suggests no major differences between the meat- and vegetable-associated strains that would explain their "niche" specificity. Finally, the comparison with the genomes of other leuconostocs highlights the distribution of functionally interesting genes across the L. gelidum strains and the genus Leuconostoc.

Indexed as

Comparative genomic analysisFood spoilageFunctional genome annotationLeuconostoc gelidum subsp. gasicomitatumModified-atmosphere packagingVegetable products

Identifiers

PMID27274361
PMCPMC4895993
OpenAlexW2410268314

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.