Evidence map›Paper›PMID 27274076›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Pseudomonas syringae type III effector HopAF1 suppresses plant immunity by targeting methionine recycling to block ethylene induction.

Erica J Washington, M Shahid Mukhtar, Omri M Finkel, Li Wan, Mark J Banfield, Joseph J Kieber, Jeffery L Dangl

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
11.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 83 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Review
  6. Article
  7. Article
  8. RNA-binding proteins orchestrating immunity in plants.The Plant journal : for cell and molecular biology · 2025
    Review
  9. Review
  10. Review
  11. Article
  12. Review
  13. Plant microbiota controls an alternative root branching regulatory mechanism in plants.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  14. Article
  15. Fungal Effectoromics: A World in Constant Evolution.International journal of molecular sciences · 2022
    Review
  16. Article
  17. Action Mechanisms of Effectors in Plant-Pathogen Interaction.International journal of molecular sciences · 2022
    Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Erica J WashingtonDepartment of Biology, University of North Carolina, Chapel Hill, NC 27599;
M Shahid MukhtarDepartment of Biology, University of North Carolina, Chapel Hill, NC 27599;
Omri M FinkelDepartment of Biology, University of North Carolina, Chapel Hill, NC 27599;
Li WanDepartment of Biology, University of North Carolina, Chapel Hill, NC 27599;
Mark J BanfieldDepartment of Biological Chemistry, John Innes Centre, Norwich NR4 7UH, United Kingdom;ORCID 0000-0001-8921-3835
Joseph J KieberDepartment of Biology, University of North Carolina, Chapel Hill, NC 27599;
Jeffery L DanglDepartment of Biology, University of North Carolina, Chapel Hill, NC 27599; Howard Hughes Medical Institute, University of North Carolina, Chapel Hill, NC 27599; Curriculum in Genetics and Molecular Biology, University of North Carolina, Chapel Hill, NC 27599; Department of Microbiology and Immunology, University of North Carolina, Chapel Hill, NC 27599; Carolina Center for Genome Sciences, University of North Carolina, Chapel Hill, NC 27599 dangl@email.unc.edu.
University of North Carolina at Chapel Hill · USJohn Innes Centre · GB

Funding

BASIC IMMUNE MECHANISMST32AI007273 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI TISCH, ROLAND M · 1985 to 2020
$5.6M
The intersection of development and innate immune system function in Arabidopsis.R01GM107444 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DANGL, JEFFERY L. · 2013 to 2020
$2.1M
CELL &MOLECULAR BIOLOGY TRAINING PROGRAMT32GM008581 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI COX, ADRIENNE D · 1996 to 2008
$1.3M
Designing robust synthetic microbiota for increasing plant productivityF32GM117758 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI FINKEL, OMRI M · 2016 to 2017
$115k
Biotechnology and Biological Sciences Research Council BB/F008732/1Biotechnology and Biological Sciences Research Council BBS/E/J/000C0624NIAID NIH HHS T32 AI007273NIGMS NIH HHS F32 GM117758NIGMS NIH HHS R01 GM107444NIGMS NIH HHS T32 GM008581
6 · The paper itself

Abstract

HopAF1 is a type III effector protein of unknown function encoded in the genomes of several strains of Pseudomonas syringae and other plant pathogens. Structural modeling predicted that HopAF1 is closely related to deamidase proteins. Deamidation is the irreversible substitution of an amide group with a carboxylate group. Several bacterial virulence factors are deamidases that manipulate the activity of specific host protein substrates. We identified Arabidopsis methylthioadenosine nucleosidase proteins MTN1 and MTN2 as putative targets of HopAF1 deamidation. MTNs are enzymes in the Yang cycle, which is essential for the high levels of ethylene biosynthesis in Arabidopsis We hypothesized that HopAF1 inhibits the host defense response by manipulating MTN activity and consequently ethylene levels. We determined that bacterially delivered HopAF1 inhibits ethylene biosynthesis induced by pathogen-associated molecular patterns and that Arabidopsis mtn1 mtn2 mutant plants phenocopy the effect of HopAF1. Furthermore, we identified two conserved asparagines in MTN1 and MTN2 from Arabidopsis that confer loss of function phenotypes when deamidated via site-specific mutation. These residues are potential targets of HopAF1 deamidation. HopAF1-mediated manipulation of Yang cycle MTN proteins is likely an evolutionarily conserved mechanism whereby HopAF1 orthologs from multiple plant pathogens contribute to disease in a large variety of plant hosts.

Indexed as

AcylationAmino Acid SequenceArabidopsisBacterial ProteinsCatalytic DomainCell MembraneEthylenesEvolution, MolecularGene DuplicationMethioninePhylogenyPseudomonas syringaeSequence Homology, Amino AcidBacterial ProteinsethyleneEthylenesMethionineethyleneplant immune systemPseudomonas syringaetype III effectorsYang cycle

Identifiers

PMID27274076
PMCPMC4922156
OpenAlexW2415287383

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.